RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 SUCLA2Q9P2R7 463 aaPredicted RBP10.84□□□□□ -0.67
GTF3C1-202ENST00000561623 LRRIQ3A6PVS8 624 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 HOXA7P31268 230 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 GNL1P36915 607 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 EFTUD2Q15029 972 aaKnown RBP eCLIP10.83□□□□□ -0.683e-6■■■□□ 17.4
GTF3C1-202ENST00000561623 MIS18BP1Q6P0N0 1132 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ATXN7L3BQ96GX2 97 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 BRIP1Q9BX63 1249 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 SETD1BQ9UPS6 1966 aaKnown RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 LTKP29376 864 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 CRKLP46109 303 aaKnown RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ANGPTL8Q6UXH0 198 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ATP11CQ8NB49 1132 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 THAP11Q96EK4 314 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 SUN2Q9UH99 717 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L15C9J2P7 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L13C9JLJ4 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L11C9JVI0 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L18D6R9N7 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L22D6RA61 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L17D6RBQ6 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L19D6RCP7 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L20D6RJB6 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 PSMD14O00487 310 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 CHEK2O96017 543 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 NEK2P51955 445 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L24Q0WX57 530 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 AGBL2Q5U5Z8 902 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 USP17L6PQ6QN14 398 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 RSRC2Q7L4I2 434 aaKnown RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 RHPN2Q8IUC4 686 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 SERPINB13Q9UIV8 391 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 PLEKHG1Q9ULL1 1385 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 H2AFXP16104 143 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 SOX5P35711 763 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 CTCFP49711 727 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 FASTKD5Q7L8L6 764 aaKnown RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 CCDC17Q96LX7 622 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 GPR101Q96P66 508 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ASCC2Q9H1I8 757 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ARHGAP26Q9UNA1 814 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 MYL3P08590 195 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 ATP2C1P98194 919 aaPredicted RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 POU5F1BQ06416 359 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 DPYDQ12882 1025 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 FLOT2Q14254 428 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 BZW1Q7L1Q6 419 aaKnown RBP10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 SLC35G2Q8TBE7 412 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 MFSD1Q9H3U5 465 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 AURKCQ9UQB9 309 aa10.83□□□□□ -0.68
GTF3C1-202ENST00000561623 TMEM120BA0PK00 339 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PRAMEP78395 509 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 SH3RF3Q8TEJ3 882 aaPredicted RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 C9orf72Q96LT7 481 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 ITIH6Q6UXX5 1313 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 SRGAP2CP0DJJ0 459 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 SRGNP10124 158 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 NPR1P16066 1061 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 KRT39Q6A163 491 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 THTPAQ9BU02 230 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 TSSK1BQ9BXA7 367 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 WWP1Q9H0M0 922 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 GOLPH3Q9H4A6 298 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 FAM96AQ9H5X1 160 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PMLP29590 882 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 STAT4Q14765 748 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 NAIF1Q69YI7 327 aaPredicted RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 KLHL8Q9P2G9 620 aaPredicted RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 XDHP47989 1333 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 BCORL1Q5H9F3 1711 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 SLC16A4O15374 487 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PDHBP11177 359 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 BRD2P25440 801 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 VAMP7P51809 220 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 GALNT4Q8N4A0 578 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 DACH2Q96NX9 599 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 FAM118BQ9BPY3 351 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 TMEM47Q9BQJ4 181 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 LRRC4Q9HBW1 653 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PAIP2BQ9ULR5 123 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PCDHA6Q9UN73 950 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 PCDHA8Q9Y5H6 950 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 TDP2O95551 362 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 CPA2P48052 419 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 NBPF20Q3BBV1 942 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 TEDDM1Q5T9Z0 273 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 CIAPIN1Q6FI81 312 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 GUF1Q8N442 669 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 XXYLT1Q8NBI6 393 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 ALKBH8Q96BT7 664 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 FAM213AQ9BRX8 229 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 OLA1Q9NTK5 396 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 CLDN3O15551 220 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 SYF2O95926 243 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 TTC13Q8NBP0 860 aa10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 HNRNPLLQ8WVV9 542 aaKnown RBP10.82□□□□□ -0.68
GTF3C1-202ENST00000561623 ATP7BP35670 1465 aa10.81□□□□□ -0.68
GTF3C1-202ENST00000561623 WDR19Q8NEZ3 1342 aa10.81□□□□□ -0.68
GTF3C1-202ENST00000561623 H7C1W4 665 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms