RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PAXBP1Q9Y5B6 917 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MRPL42Q9Y6G3 142 aaKnown RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SCN7AQ01118 1682 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 GSTTP1A0A1W2PQM5 241 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SOWAHDA6NJG2 315 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 NT5C1B-RDH14C9J2C7 533 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 I3L4J1 428 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 LPXNO60711 386 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 STAM2O75886 525 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 HSPA1AP0DMV8 641 aaKnown RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 HSPA1BP0DMV9 641 aaKnown RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CD52P31358 61 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CASQ1P31415 396 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 PSMD2Q13200 908 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ITGA7Q13683 1181 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CDO1Q16878 200 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 VWA3BQ502W6 1294 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 RSRC2Q7L4I2 434 aaKnown RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 TEX2Q8IWB9 1127 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 FAM117AQ9C073 453 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MTMR12Q9C0I1 747 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CERS4Q9HA82 394 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 PLCB1Q9NQ66 1216 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ANKEF1Q9NU02 776 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 KBTBD4Q9NVX7 518 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 HESX1Q9UBX0 185 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 DNAJC12Q9UKB3 198 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 RIOK3O14730 519 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CAPN9O14815 690 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 RHOBTB3O94955 611 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 GNA14O95837 355 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CALCAP01258 141 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ACRP10323 421 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 RBM10P98175 930 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 LRRC63Q05C16 580 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ORC2Q13416 577 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 NAA35Q5VZE5 725 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 SLFN12LQ6IEE8 588 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MOXD1Q6UVY6 613 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 GPD1LQ8N335 351 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CACTINQ8WUQ7 758 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 LMBR1Q8WVP7 490 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 DNAI2Q9GZS0 605 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 C2orf40Q9H1Z8 148 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 AGPAT3Q9NRZ7 376 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MAP3K20Q9NYL2 800 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CACNG4Q9UBN1 327 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 VAV3Q9UKW4 847 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 HYOU1Q9Y4L1 999 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 DLEC1Q9Y238 1755 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 NRXN2Q9P2S2 1712 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ANKRD63C9JTQ0 380 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 AKAP3O75969 853 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 SNAI1O95863 264 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CYP3A4P08684 503 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 TNNT3P45378 269 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 PPP2R5CQ13362 524 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 NOLC1Q14978 699 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 EEF1DP3Q658K8 133 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 DHX40Q8IX18 779 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 EXOC8Q8IYI6 725 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 C4orf32Q8N8J7 132 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 PAWRQ96IZ0 340 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ALS2CR12Q96Q35 445 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ADAM2Q99965 735 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 HSD17B14Q9BPX1 270 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 IFIH1Q9BYX4 1025 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MIS12Q9H081 205 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 SEMA6BQ9H3T3 888 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 SYNPO2Q9UMS6 1093 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CDY2AQ9Y6F7 541 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 KIAA1551Q9HCM1 1747 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 IGSF9BQ9UPX0 1349 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MYADML2A6NDP7 307 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 RRN3P2A6NIE6 340 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ENC1O14682 589 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ITGB3P05106 788 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MYL1P05976 194 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MMP3P08254 477 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ITGA4P13612 1032 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 P4HA1P13674 534 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 CPB1P15086 417 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 GLRA2P23416 452 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 PDE6CP51160 858 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 EFNA5P52803 228 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 PTK2Q05397 1052 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 INTS8Q75QN2 995 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF720Q7Z2F6 126 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 LENG9Q96B70 501 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF653Q96CK0 615 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MTMR8Q96EF0 704 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 GAD1Q99259 594 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 FLRT1Q9NZU1 646 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 ODF2LQ9ULJ1 636 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 PYCARDQ9ULZ3 195 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 TFR2Q9UP52 801 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 MYO5AQ9Y4I1 1855 aaKnown RBP5.88□□□□□ -1.47
VPS13C-209ENST00000560637 DUOX1Q9NRD9 1551 aa5.88□□□□□ -1.47
VPS13C-209ENST00000560637 A8MXQ7 604 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 PPP1R3GB7ZBB8 358 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms