RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 GADL1Q6ZQY3 521 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 FMNL3Q8IVF7 1028 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 CCDC60Q8IWA6 550 aaPredicted RBP11.96□□□□□ -0.49
SPG11-217ENST00000559511 KLHL7Q8IXQ5 586 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 SLC17A8Q8NDX2 589 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 LMBR1Q8WVP7 490 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 OTUD5Q96G74 571 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
SPG11-217ENST00000559511 AGPAT1Q99943 283 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 THAP2Q9H0W7 228 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 EPB41L5Q9HCM4 733 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 JPH1Q9HDC5 661 aaPredicted RBP11.96□□□□□ -0.49
SPG11-217ENST00000559511 KMT5AQ9NQR1 393 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 SUCLA2Q9P2R7 463 aaPredicted RBP11.96□□□□□ -0.49
SPG11-217ENST00000559511 ADGRA3Q8IWK6 1321 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 MCM3APO60318 1980 aa11.96□□□□□ -0.49
SPG11-217ENST00000559511 A0A0G2JLL6 359 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 RAD51CO43502 376 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 SMTNP53814 917 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 MCCD1P59942 119 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 MAP2K1Q02750 393 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 PPATQ06203 517 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 TRADDQ15628 312 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 DPY19L2Q6NUT2 758 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 EMBQ6PCB8 327 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 USP50Q70EL3 339 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 PRRT2Q7Z6L0 340 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 IFT20Q8IY31 132 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 SYCE1Q8N0S2 351 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 TSEN2Q8NCE0 465 aaKnown RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 CHST13Q8NET6 341 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 SCFD2Q8WU76 684 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 CTNNBL1Q8WYA6 563 aaPredicted RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 SEMA4DQ92854 862 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 CAVIN3Q969G5 261 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 HES6Q96HZ4 224 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 POP1Q99575 1024 aaKnown RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 FAM204AQ9H8W3 233 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 PSD3Q9NYI0 1048 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 NFU1Q9UMS0 254 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 EXOC7Q9UPT5 735 aa11.96□□□□□ -0.5
SPG11-217ENST00000559511 NOC2LQ9Y3T9 749 aaKnown RBP11.96□□□□□ -0.5
SPG11-217ENST00000559511 GOLGA6BA6NDN3 693 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 TULP1O00294 542 aaPredicted RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 EPHX2P34913 555 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 LMAN1P49257 510 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ACTR2P61160 394 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 CNTN2Q02246 1040 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 OTUD6AQ7L8S5 288 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ERO1BQ86YB8 467 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ANKRD13AQ8IZ07 590 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PROCA1Q8NCQ7 364 aaPredicted RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 CASKIN2Q8WXE0 1202 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 KIFAP3Q92845 792 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ATP6V0A1Q93050 837 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 CCDC127Q96BQ5 260 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 HVCN1Q96D96 273 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 KREMEN1Q96MU8 473 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.95□□□□□ -0.5
SPG11-217ENST00000559511 NTPCRQ9BSD7 190 aaKnown RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 AP1M1Q9BXS5 423 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 XPNPEP1Q9NQW7 623 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PDLIM7Q9NR12 457 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 TOPORSQ9NS56 1045 aaPredicted RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 SLC9A2Q9UBY0 812 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 SEPT9Q9UHD8 586 aaPredicted RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 COG5Q9UP83 839 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 SPDYE5A6NIY4 337 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 SPATA31C2B4DYI2 1134 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PGRMC1O00264 195 aaKnown RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 PMM2O15305 246 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 STAM2O75886 525 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PSAPP07602 524 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 FAM153BP0C7A2 387 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 TNNC1P63316 161 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 SP2Q02086 613 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PRKCEQ02156 737 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 FSTL1Q12841 308 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 FAM153CQ494X1 144 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ABHD15Q6UXT9 468 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 RIOX2Q8IUF8 465 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 RASGEF1CQ8N431 466 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 PARD3BQ8TEW8 1205 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ZC3H15Q8WU90 426 aaKnown RBP11.95□□□□□ -0.5
SPG11-217ENST00000559511 SPIRE2Q8WWL2 714 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 IFT81Q8WYA0 676 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 ACP6Q9NPH0 428 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 FAM153AQ9UHL3 310 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 USP20Q9Y2K6 914 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 NFASCO94856 1347 aa11.95□□□□□ -0.5
SPG11-217ENST00000559511 SIP14410 1827 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 ANKRD62A6NC57 917 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 CHRNB2P17787 502 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 NF2P35240 595 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 USP8P40818 1118 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 KCTD19Q17RG1 926 aaPredicted RBP11.94□□□□□ -0.5
SPG11-217ENST00000559511 DCAF12L1Q5VU92 463 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 TAS1R3Q7RTX0 852 aa11.94□□□□□ -0.5
SPG11-217ENST00000559511 RPUSD2Q8IZ73 545 aaKnown RBP11.94□□□□□ -0.5
SPG11-217ENST00000559511 ANKRD35Q8N283 1001 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms