RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 OCRLQ01968 901 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 HECTD2Q5U5R9 776 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 HOMER1Q86YM7 354 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 MSL3Q8N5Y2 521 aaKnown RBP6.66□□□□□ -1.34
VPS13C-208ENST00000559119 GPR101Q96P66 508 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-208ENST00000559119 FDXACB1Q9BRP7 624 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-208ENST00000559119 MTFR1LQ9H019 292 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 PCSK5Q92824 1860 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 CENPVL1A0A0U1RR11 272 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 TAP1Q03518 808 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 XYLT1Q86Y38 959 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 GLB1L2Q8IW92 636 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 ZNF610Q8N9Z0 462 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 TOR3AQ9H497 397 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS13C-208ENST00000559119 SPON1Q9HCB6 807 aa6.65□□□□□ -1.34
VPS13C-208ENST00000559119 COL4A3Q01955 1670 aa6.65□□□□□ -1.35
VPS13C-208ENST00000559119 A0A1W2PR48 441 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 PRSS38A1L453 326 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 RNASET2O00584 256 aaKnown RBP6.64□□□□□ -1.35
VPS13C-208ENST00000559119 ZFP36P26651 326 aaKnown RBP6.64□□□□□ -1.35
VPS13C-208ENST00000559119 SCNN1BP51168 640 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 PTTG1IPP53801 180 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 USP14P54578 494 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 PHC1P78364 1004 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 FAM189BP81408 668 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 PPARAQ07869 468 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 CCDC144BQ3MJ40 725 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 GDF7Q7Z4P5 450 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 SMC1BQ8NDV3 1235 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 BEND2Q8NDZ0 799 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 KCNG1Q9UIX4 513 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 NUMBLQ9Y6R0 609 aa6.64□□□□□ -1.35
VPS13C-208ENST00000559119 ZAR1LA6NP61 321 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 LPXNO60711 386 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 PRAMEF4O60810 478 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 APBA1Q02410 837 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 PCBP1Q15365 356 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS13C-208ENST00000559119 UBE3CQ15386 1083 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 C11orf74Q86VG3 221 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 LCORLQ8N3X6 602 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 LILRA3Q8N6C8 439 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-208ENST00000559119 SUPT20HQ8NEM7 779 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 RSAD2Q8WXG1 361 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 NINJ1Q92982 152 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 CDC5LQ99459 802 aaKnown RBP6.63□□□□□ -1.35
VPS13C-208ENST00000559119 SERHL2Q9H4I8 314 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 AKIP1Q9NQ31 210 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 ANKFY1Q9P2R3 1169 aa6.63□□□□□ -1.35
VPS13C-208ENST00000559119 GAGE12BA1L429 117 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 LCHNA4D1U4 455 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 GAGE12HA6NDE8 117 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 TMEM200CA6NKL6 621 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 RAB11FIP3O75154 756 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 NCR1O76036 304 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 LTA4HP09960 611 aaKnown RBP6.62□□□□□ -1.35
VPS13C-208ENST00000559119 IL2P60568 153 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 TERF2Q15554 542 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 STRIP1Q5VSL9 837 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 FRMD7Q6ZUT3 714 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 C16orf86Q6ZW13 317 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 AHI1Q8N157 1196 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 PPM1KQ8N3J5 372 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 VOPP1Q96AW1 172 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 ANO3Q9BYT9 981 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 WDR11Q9BZH6 1224 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 WNT8AQ9H1J5 351 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 SPTLC3Q9NUV7 552 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 PTGFRNQ9P2B2 879 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 PPP2R3BQ9Y5P8 575 aa6.62□□□□□ -1.35
VPS13C-208ENST00000559119 FAM83GA6ND36 823 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 DIRC3C9JPN6 131 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 LEFTY2O00292 366 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 NDUFA10O95299 355 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 ZEB1P37275 1124 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-208ENST00000559119 LSSP48449 732 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 RNASE9P60153 205 aaKnown RBP6.61□□□□□ -1.35
VPS13C-208ENST00000559119 NHLH2Q02577 135 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 OLFML1Q6UWY5 402 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 GPRIN1Q7Z2K8 1008 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 PLXDC1Q8IUK5 500 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 ARHGEF19Q8IW93 802 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 NIM1KQ8IY84 436 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 OR2W6PQ8NHA6 318 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 APPBP2Q92624 585 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 RNPC3Q96LT9 517 aaKnown RBP6.61□□□□□ -1.35
VPS13C-208ENST00000559119 MS4A5Q9H3V2 200 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 PRSS50Q9UI38 385 aa6.61□□□□□ -1.35
VPS13C-208ENST00000559119 CLEC2LP0C7M8 214 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 FBLP22087 321 aaKnown RBP6.6□□□□□ -1.35
VPS13C-208ENST00000559119 MGAT1P26572 445 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 AVPR1BP47901 424 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 CCDC142Q17RM4 750 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 TKFCQ3LXA3 575 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 EFCAB12Q6NXP0 572 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 Q6YL49 198 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 DHX37Q8IY37 1157 aaKnown RBP6.6□□□□□ -1.35
VPS13C-208ENST00000559119 OR10H5Q8NGA6 315 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 OR14C36Q8NHC7 312 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 FANCLQ9NW38 375 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms