RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 KIFAP3Q92845 792 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 GPRASP2Q96D09 838 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 FAM81BQ96LP2 452 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 AGPAT1Q99943 283 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 SENP7Q9BQF6 1050 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 GPR88Q9GZN0 384 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 CARD9Q9H257 536 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 TAOK3Q9H2K8 898 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 HSPBP1Q9NZL4 362 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 PIM2Q9P1W9 311 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 KCNG1Q9UIX4 513 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 PACSIN2Q9UNF0 486 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 EMSYQ7Z589 1322 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 GOLGA6L10A6NI86 522 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 KRIT1O00522 736 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 STAM2O75886 525 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GLI1P08151 1106 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 VCAM1P19320 739 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 KCNA3P22001 575 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 POLD1P28340 1107 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GTF2H1P32780 548 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 HSPA9P38646 679 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 BAG6P46379 1132 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RPS6P62753 249 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 MRPS9P82933 396 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 PPATQ06203 517 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 DMP1Q13316 513 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 NBPF9Q3BBW0 867 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ARHGEF16Q5VV41 709 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 LRIG3Q6UXM1 1119 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SLC30A10Q6XR72 485 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 HAUS6Q7Z4H7 955 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GLYCTKQ8IVS8 523 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 KSR1Q8IVT5 923 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 CPXCR1Q8N123 301 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 UBL4BQ8N7F7 174 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 IL31RAQ8NI17 732 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 CASKIN2Q8WXE0 1202 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ATP6V0A1Q93050 837 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 CDHR1Q96JP9 859 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GDAP1L1Q96MZ0 367 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RMDN3Q96TC7 470 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 PDCD2LQ9BRP1 358 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RAB17Q9H0T7 212 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RAVER2Q9HCJ3 691 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 POLD4Q9HCU8 107 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 PXMP2Q9NR77 195 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 FAM114A2Q9NRY5 505 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SEPT11Q9NVA2 429 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 NFU1Q9UMS0 254 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ARID2Q68CP9 1835 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 PHIPQ8WWQ0 1821 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ASTN2O75129 1339 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SYNGAP1Q96PV0 1343 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 BHMG1C9JSJ3 638 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GGPS1O95749 300 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ZBTB48P10074 688 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 EIF2AK2P19525 551 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 GBP1P32455 592 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 CARSP49589 748 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 MFAP3P55082 362 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SKOR1P84550 965 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ARHGAP44Q17R89 818 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 XKR9Q5GH70 373 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SPDYCQ5MJ68 293 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 MAP4K3Q8IVH8 894 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 KLHL7Q8IXQ5 586 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 MCPH1Q8NEM0 835 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 LMO3Q8TAP4 145 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SLC35G2Q8TBE7 412 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SPIRE2Q8WWL2 714 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 IFT81Q8WYA0 676 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 TEPSINQ96N21 525 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RUNDC3BQ96NL0 473 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 ZIM3Q96PE6 472 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 TRERF1Q96PN7 1200 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 FAM107BQ9H098 131 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 RPAP3Q9H6T3 665 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 BCAS3Q9H6U6 928 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 UBE2TQ9NPD8 197 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 PKD2L1Q9P0L9 805 aa7.85□□□□□ -1.15
VPS13C-206ENST00000558338 UTP11Q9Y3A2 253 aaKnown RBP7.85□□□□□ -1.15
VPS13C-206ENST00000558338 FAM187AA6NFU0 413 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 HMGB1P1B2RPK0 211 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 BACH1O14867 736 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 SART1O43290 800 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 BUB1BO60566 1050 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 RTN2O75298 545 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 PPFIA4O75335 1185 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 MTA2O94776 668 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 ERLIN2O94905 339 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 MYCLP12524 364 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 GZMAP12544 262 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 PEX3P56589 373 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 RTP1P59025 263 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 DHX34Q14147 1143 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 HLTFQ14527 1009 aaKnown RBP eCLIP7.84□□□□□ -1.155e-6■□□□□ 9.5
VPS13C-206ENST00000558338 PLS1Q14651 629 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms