RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PPFIA2O75334 1257 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 BCRP11274 1271 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 FGFR4P22455 802 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 CAP2P40123 477 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 SLC29A2Q14542 456 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 SLC9A9Q8IVB4 645 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 PI4K2AQ9BTU6 479 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 ZNF341Q9BYN7 854 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 MTFR1LQ9H019 292 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 FAM114A2Q9NRY5 505 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 GRHL1Q9NZI5 618 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 RBBP6Q7Z6E9 1792 aaKnown RBP13.89□□□□□ -0.19
LDLR-207ENST00000558013 GMNCA6NCL1 334 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 FOXO6A8MYZ6 492 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 TRAPPC3O43617 180 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 CPP00450 1065 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 MYCLP12524 364 aaPredicted RBP13.89□□□□□ -0.19
LDLR-207ENST00000558013 PTGIRP43119 386 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 PEX5P50542 639 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 TKFCQ3LXA3 575 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 INTS8Q75QN2 995 aaKnown RBP13.89□□□□□ -0.19
LDLR-207ENST00000558013 XXYLT1Q8NBI6 393 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 C1orf131Q8NDD1 294 aaKnown RBP13.89□□□□□ -0.19
LDLR-207ENST00000558013 CLEC4DQ8WXI8 215 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 TAAR1Q96RJ0 339 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 NOCTQ9UK39 431 aaKnown RBP13.89□□□□□ -0.19
LDLR-207ENST00000558013 TRPC6Q9Y210 931 aa13.89□□□□□ -0.19
LDLR-207ENST00000558013 KIAA0754O94854 1291 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 P4HBP07237 508 aaKnown RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 YWHABP31946 246 aaKnown RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 FNTAP49354 379 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 GPC5P78333 572 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 FAM102BQ5T8I3 360 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 RUFY4Q6ZNE9 571 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 FAM151AQ8WW52 585 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 ZSWIM1Q9BR11 485 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 RPTORQ8N122 1335 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 CCDC169A6NNP5 214 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 PLS3P13797 630 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 HNRNPH1P31943 449 aaKnown RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 MXI1P50539 228 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 RIT2Q99578 217 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 CCNE2O96020 404 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 SSTR3P32745 418 aaPredicted RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 PMS2P54278 862 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 SETQ01105 290 aaPredicted RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 CCDC38Q502W7 563 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 ACCSQ96QU6 501 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 AGO4Q9HCK5 861 aaKnown RBP13.88□□□□□ -0.19
LDLR-207ENST00000558013 KCND2Q9NZV8 630 aa13.88□□□□□ -0.19
LDLR-207ENST00000558013 ASTN2O75129 1339 aaPredicted RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 BRWD3Q6RI45 1802 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 GOLGA6L10A0A0M3HER8 536 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 CCDC172P0C7W6 258 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 QARSP47897 775 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 HSD17B4P51659 736 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 FMO1Q01740 532 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 SP4Q02446 784 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 SF3B2Q13435 895 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 BIRC3Q13489 604 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 MTMR1Q13613 665 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 MTMR3Q13615 1198 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 BYSLQ13895 437 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 STYK1Q6J9G0 422 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 RSBN1LQ6PCB5 846 aaPredicted RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 CCDC137Q6PK04 289 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 CCDC25Q86WR0 208 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 TAS1R2Q8TE23 839 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 EPS8L3Q8TE67 593 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 TATDN2Q93075 761 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 WNK4Q96J92 1243 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 PSMD1Q99460 953 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 NUP85Q9BW27 656 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 RAB17Q9H0T7 212 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 DNAJC17Q9NVM6 304 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 A6NNZ2 444 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 CLSTN1O94985 981 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 RARAP10276 462 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 PTGER2P43116 358 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 SNX1Q13596 522 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 SNRNP35Q16560 246 aaKnown RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 TUBB8Q3ZCM7 444 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 LMBRD2Q68DH5 695 aaPredicted RBP13.87□□□□□ -0.19
LDLR-207ENST00000558013 RHOT2Q8IXI1 618 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 C1orf54Q8WWF1 131 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 BSNDQ8WZ55 320 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 OSBPL7Q9BZF2 842 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 AZI2Q9H6S1 392 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 PCDHA3Q9Y5H8 950 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 UBE4BO95155 1302 aa13.87□□□□□ -0.19
LDLR-207ENST00000558013 H0YHG0 523 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 DLATP10515 647 aaKnown RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 RASA3Q14644 834 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 XKR9Q5GH70 373 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 C6orf89Q6UWU4 347 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 FAM71AQ8IYT1 594 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 PLCD3Q8N3E9 789 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 FAM118BQ9BPY3 351 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 DNM1LO00429 736 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 CLDN3O15551 220 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms