RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 WHAMMP3Q1A5X7 153 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ZNF792Q3KQV3 632 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 IER5Q5VY09 327 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SMYD5Q6GMV2 418 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 TRMT1LQ7Z2T5 733 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 EFCAB13Q8IY85 973 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 GPD1LQ8N335 351 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 DEPTORQ8TB45 409 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 BRI3BPQ8WY22 251 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 GLG1Q92896 1179 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 GPR20Q99678 358 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SH2D3AQ9BRG2 576 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 CBWD1Q9BRT8 395 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 INTS2Q9H0H0 1204 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 C2orf40Q9H1Z8 148 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ATP4AP20648 1035 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 USP8P40818 1118 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 MAGEA1P43355 309 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 LIG4P49917 911 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 MXI1P50539 228 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 JAM2P57087 298 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 CHMP4BP1P59074 171 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 LY6KQ17RY6 165 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 MAP9Q49MG5 647 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 BEND6Q5SZJ8 279 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-229ENST00000557348 SWT1Q5T5J6 900 aaKnown RBP13.71□□□□□ -0.21
SHMT2-229ENST00000557348 DPY19L2P1Q6NXN4 242 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 ARMCX2Q7L311 632 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 SLC35F6Q8N357 371 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 BSNDQ8WZ55 320 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 POMGNT1Q8WZA1 660 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 RUBCNQ92622 972 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 EMID1Q96A84 441 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-229ENST00000557348 RPGRIP1Q96KN7 1286 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 SPATA33Q96N06 139 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 CEP89Q96ST8 783 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 PCYT2Q99447 389 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 SIX2Q9NPC8 291 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 STYXL1Q9Y6J8 313 aa13.71□□□□□ -0.21
SHMT2-229ENST00000557348 RBM47A0AV96 593 aaKnown RBP13.7□□□□□ -0.22
SHMT2-229ENST00000557348 HBP1O60381 514 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 PEX10O60683 326 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 GH1P01241 217 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 POTEJP0CG39 1038 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 ADORA2AP29274 412 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 IFI16Q16666 785 aaKnown RBP13.7□□□□□ -0.22
SHMT2-229ENST00000557348 TTC31Q49AM3 519 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-229ENST00000557348 WDR93Q6P2C0 686 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 MAMDC4Q6UXC1 1216 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 ANKRD13CQ8N6S4 541 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 MFSD14AQ96MC6 490 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 PCIF1Q9H4Z3 704 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 L1RE1Q9UN81 338 aa13.7□□□□□ -0.22
SHMT2-229ENST00000557348 MANSC4A6NHS7 340 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ZNF233A6NK53 670 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 BTNL10A8MVZ5 291 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 K7ERI5 159 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 KIF3CO14782 793 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 EXTL3O43909 919 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TLR2O60603 784 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ZC3H11AO75152 810 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 GLRA2P23416 452 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 SOX5P35711 763 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 LMAN1P49257 510 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 CORO7P57737 925 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TFDP1Q14186 410 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 KRT39Q6A163 491 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ZPBP2Q6X784 338 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 EEPD1Q7L9B9 569 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 FBXO16Q8IX29 292 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 PSPC1Q8WXF1 523 aaKnown RBP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 RRAGCQ9HB90 399 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TMEM8AQ9HCN3 771 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TSKSQ9UJT2 592 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 INTUQ9ULD6 942 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 SLC15A5A6NIM6 579 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 LRRIQ4A6NIV6 560 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 F8VZ95 297 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ASAP2O43150 1006 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ADCY3O60266 1144 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ARIH2O95376 493 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 PLEKP08567 350 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TRIM49P0CI25 452 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 TRIM49CP0CI26 452 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ACTN1P12814 892 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 AARSP49588 968 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 GTF2A1P52655 376 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-229ENST00000557348 GRB14Q14449 540 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 CBWD6Q4V339 395 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 EPC2Q52LR7 807 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 CBWD3Q5JTY5 395 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ZNF484Q5JVG2 852 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 CBWD5Q5RIA9 395 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 IQCEQ6IPM2 695 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 IRF2BP2Q7Z5L9 587 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 PLEKHH3Q7Z736 793 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ZBTB8OSQ8IWT0 167 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 RDH13Q8NBN7 331 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 PARD3BQ8TEW8 1205 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 NOX5Q96PH1 765 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms