RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 RBM19Q9Y4C8 960 aaKnown RBP11.33□□□□□ -0.6
SCFD1-220ENST00000556486 V9GY48 417 aaPredicted RBP11.33□□□□□ -0.6
SCFD1-220ENST00000556486 SMCO2A6NFE2 343 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 ZBTB42B2RXF5 422 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 FAM86B1E9PN63 330 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 CXCL14O95715 111 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 EOMESO95936 686 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 LMNAP02545 664 aaKnown RBP11.32□□□□□ -0.6
SCFD1-220ENST00000556486 FAM86B2P0C5J1 330 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 IRX6P78412 446 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-220ENST00000556486 KRT17Q04695 432 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 PFKFB3Q16875 520 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-220ENST00000556486 CLLU1OSQ5K130 101 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 TMEM173Q86WV6 379 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-220ENST00000556486 ZDHHC14Q8IZN3 488 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 LRRC43Q8N309 656 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 MRPL43Q8N983 215 aaKnown RBP11.32□□□□□ -0.6
SCFD1-220ENST00000556486 HELQQ8TDG4 1101 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 RSAD2Q8WXG1 361 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 KCNB2Q92953 911 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 ZMYND12Q9H0C1 365 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 TMEM117Q9H0C3 514 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 CYP26B1Q9NR63 512 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 CA14Q9ULX7 337 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 EPG5Q9HCE0 2579 aa11.32□□□□□ -0.6
SCFD1-220ENST00000556486 COL4A3Q01955 1670 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 CCDC196A0A1B0GTZ2 297 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 IPO5O00410 1097 aaKnown RBP11.31□□□□□ -0.6
SCFD1-220ENST00000556486 BACH1O14867 736 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 FGFR4P22455 802 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 CDC27P30260 824 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 SETQ01105 290 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-220ENST00000556486 DSC3Q14574 896 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 ADCK5Q3MIX3 580 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF484Q5JVG2 852 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 ATAT1Q5SQI0 421 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 ODR4Q5SWX8 454 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 FAM160B1Q5W0V3 765 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 KIAA1841Q6NSI8 718 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 CCDC60Q8IWA6 550 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-220ENST00000556486 SMAP1Q8IYB5 467 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-220ENST00000556486 ABI1Q8IZP0 508 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 SLC39A11Q8N1S5 342 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 METTL13Q8N6R0 699 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 TMEM87AQ8NBN3 555 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 SPSB2Q99619 263 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 MTRQ99707 1265 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 AGXT2Q9BYV1 514 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 TBC1D22BQ9NU19 505 aa11.31□□□□□ -0.6
SCFD1-220ENST00000556486 KLF18A0A0U1RQI7 1052 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 GOLGA8AA7E2F4 631 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 GOLGA8BA8MQT2 603 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 GPR182O15218 404 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 ICMTO60725 284 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 SSBP05455 408 aaKnown RBP eCLIP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 DCNP07585 359 aaKnown RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 ATP4AP20648 1035 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 CIITAP33076 1130 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 PPM1AP35813 382 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 CLCN3P51790 818 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 FAM189BP81408 668 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF211Q13398 564 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 TDGQ13569 410 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF746Q6NUN9 644 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 CENPQQ7L2Z9 268 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 VPS52Q8N1B4 723 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 CCDC12Q8WUD4 166 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 TCEANC2Q96MN5 208 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 ELAC1Q9H777 363 aaKnown RBP11.3□□□□□ -0.6
SCFD1-220ENST00000556486 KCNK12Q9HB15 430 aa11.3□□□□□ -0.6
SCFD1-220ENST00000556486 KRBA1A5PL33 1030 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 SFI1A8K8P3 1242 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ZC3H11AO75152 810 aaKnown RBP eCLIP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 GPR32O75388 356 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CDC45O75419 566 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CSDE1O75534 798 aaKnown RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 C22orf31O95567 290 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 TCF3P15923 654 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF76P36508 570 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CRYBB1P53674 252 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 BCAR1P56945 870 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 RSPO4Q2I0M5 234 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 MIS18BP1Q6P0N0 1132 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CABP7Q86V35 215 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 PLA2G4DQ86XP0 818 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ECHDC2Q86YB7 292 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 REXO1Q8N1G1 1221 aaKnown RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 BCL7CQ8WUZ0 217 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 LPPQ93052 612 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 LENG9Q96B70 501 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ACSF2Q96CM8 615 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-220ENST00000556486 GBP3Q9H0R5 595 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ZBP1Q9H171 429 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 IL21Q9HBE4 155 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 PRDM9Q9NQV7 894 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF302Q9NR11 478 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 DUSP12Q9UNI6 340 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CEP131Q9UPN4 1083 aa11.29□□□□□ -0.6
SCFD1-220ENST00000556486 CEP250Q9BV73 2442 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms