RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TTC1Q99614 292 aa7.14□□□□□ -1.27
PRPF39-209ENST00000556353 SLKQ9H2G2 1235 aaPredicted RBP7.14□□□□□ -1.27
PRPF39-209ENST00000556353 NRDE2Q9H7Z3 1164 aa7.14□□□□□ -1.27
PRPF39-209ENST00000556353 GPRC5BQ9NZH0 403 aa7.14□□□□□ -1.27
PRPF39-209ENST00000556353 TRPS1Q9UHF7 1281 aa7.14□□□□□ -1.27
PRPF39-209ENST00000556353 HDAC5Q9UQL6 1122 aa7.14□□□□□ -1.27
PRPF39-209ENST00000556353 ZEB2O60315 1214 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 PRAMEF4O60810 478 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 DNAJC6O75061 913 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 LTA4HP09960 611 aaKnown RBP7.13□□□□□ -1.27
PRPF39-209ENST00000556353 GYPEP15421 78 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 TRIM25Q14258 630 aaKnown RBP7.13□□□□□ -1.27
PRPF39-209ENST00000556353 CRB2Q5IJ48 1285 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 PITRM1Q5JRX3 1037 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 METTL24Q5JXM2 366 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 HDGFL2Q7Z4V5 671 aaPredicted RBP7.13□□□□□ -1.27
PRPF39-209ENST00000556353 SLC41A1Q8IVJ1 513 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 ZNF276Q8N554 614 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 HAS1Q92839 578 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 CDY2AQ9Y6F7 541 aa7.13□□□□□ -1.27
PRPF39-209ENST00000556353 TLDC2A0PJX2 215 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 NEMP1O14524 444 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 ULK1O75385 1050 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 RECQL4O94761 1208 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 LGALS4P56470 323 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 SESN3P58005 492 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 MEF2AQ02078 507 aaPredicted RBP7.12□□□□□ -1.27
PRPF39-209ENST00000556353 STRN3Q13033 797 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 UBE3CQ15386 1083 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 CT83Q5H943 113 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 THNSL2Q86YJ6 484 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 CEP89Q96ST8 783 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 IKZF4Q9H2S9 585 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 KCTD10Q9H3F6 313 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 PRDM12Q9H4Q4 367 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 SORCS3Q9UPU3 1222 aa7.12□□□□□ -1.27
PRPF39-209ENST00000556353 GRXCR1A8MXD5 290 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 LPLP06858 475 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 ID4P47928 161 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 PURAQ00577 322 aaKnown RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 DOK3Q7L591 496 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 ZNF627Q7L945 461 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 LDLRAD3Q86YD5 345 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 SYNE4Q8N205 404 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 OR52N2Q8NGI0 321 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 CPT1CQ8TCG5 803 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 FAM193BQ96PV7 902 aaPredicted RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 PRRX2Q99811 253 aa7.11□□□□□ -1.27
PRPF39-209ENST00000556353 CPEB1Q9BZB8 566 aaKnown RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 TOPORSQ9NS56 1045 aaPredicted RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 APOBEC2Q9Y235 224 aaKnown RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 TMA7Q9Y2S6 64 aaKnown RBP7.11□□□□□ -1.27
PRPF39-209ENST00000556353 A0A087X1B8 175 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 SOX5P35711 763 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 PDCD1Q15116 288 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 VPS72Q15906 364 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 UGT8Q16880 541 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 C19orf54Q5BKX5 351 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 MRGPRGQ86SM5 289 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 ULK2Q8IYT8 1036 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 UBR7Q8N806 425 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 CLRN3Q8NCR9 226 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 EAF2Q96CJ1 260 aaPredicted RBP7.1□□□□□ -1.27
PRPF39-209ENST00000556353 PAWRQ96IZ0 340 aaKnown RBP7.1□□□□□ -1.27
PRPF39-209ENST00000556353 ACAP3Q96P50 834 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 CDC5LQ99459 802 aaKnown RBP7.1□□□□□ -1.27
PRPF39-209ENST00000556353 LSM14BQ9BX40 385 aaKnown RBP7.1□□□□□ -1.27
PRPF39-209ENST00000556353 CAAP1Q9H8G2 361 aa7.1□□□□□ -1.27
PRPF39-209ENST00000556353 EIF2B4Q9UI10 523 aaKnown RBP7.1□□□□□ -1.27
PRPF39-209ENST00000556353 PRR5-ARHGAP8B1AHC4 643 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 TRIM24O15164 1050 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 TMEM127O75204 238 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 PPFIA4O75335 1185 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 SCAF4O95104 1147 aaKnown RBP7.09□□□□□ -1.27
PRPF39-209ENST00000556353 HSP90B1P14625 803 aaKnown RBP7.09□□□□□ -1.27
PRPF39-209ENST00000556353 HSD3B2P26439 372 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 APBA1Q02410 837 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 FSCN1Q16658 493 aaKnown RBP7.09□□□□□ -1.27
PRPF39-209ENST00000556353 ABHD15Q6UXT9 468 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 SNX33Q8WV41 574 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 LENG9Q96B70 501 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 CLCA2Q9UQC9 943 aa7.09□□□□□ -1.27
PRPF39-209ENST00000556353 ENPP1P22413 925 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 IQSEC1Q6DN90 963 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 MRGPREQ86SM8 312 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 XYLT1Q86Y38 959 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 RAX2Q96IS3 184 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 NDC1Q9BTX1 674 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 FZD1Q9UP38 647 aa7.08□□□□□ -1.28
PRPF39-209ENST00000556353 CECR2Q9BXF3 1484 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 TMEM191CA6NGB0 347 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 BRINP1O60477 761 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 RAMP2O60895 175 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 GASTP01350 101 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 CTSSP25774 331 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.07□□□□□ -1.28
PRPF39-209ENST00000556353 CT47A1Q5JQC4 288 aaPredicted RBP7.07□□□□□ -1.28
PRPF39-209ENST00000556353 GIMAP6Q6P9H5 292 aa7.07□□□□□ -1.28
PRPF39-209ENST00000556353 STRA8Q7Z7C7 330 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms