RNA–Protein interactions for RNA: ENST00000554994.5

ATXN3-231, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-231	ENST00000554994	RIOX2	Q8IUF8	465 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	HERC6	Q8IVU3	1022 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	PLD6	Q8N2A8	252 aa	Known RBP	5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	FAM181A	Q8N9Y4	354 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	TTC16	Q8NEE8	873 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	KCNG4	Q8TDN1	519 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	EDEM1	Q92611	657 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	GLT1D1	Q96MS3	346 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	JAKMIP1	Q96N16	626 aa	Known RBP	5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	MYL10	Q9BUA6	226 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	NOC4L	Q9BVI4	516 aa	Known RBP	5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	MBNL3	Q9NUK0	354 aa	Known RBP	5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	FAM105A	Q9NUU6	356 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	ADAMTS6	Q9UKP5	1117 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	FAM50B	Q9Y247	325 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	RIPK3	Q9Y572	518 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	MROH7	Q68CQ1	1323 aa		5.38	□□□□□ -1.55
ATXN3-231	ENST00000554994	VPS13A	Q96RL7	3174 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	LCT	P09848	1927 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	LOXHD1	Q8IVV2	1947 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	WDR87	Q6ZQQ6	2873 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994		A0A0U1RQG5	324 aa	Predicted RBP	5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994		B8ZZF3	427 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	ARVCF	O00192	962 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	PDHB	P11177	359 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	PDIA4	P13667	645 aa	Known RBP	5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	CAST	P20810	708 aa	Known RBP	5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	CALML3	P27482	149 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	PSMA5	P28066	241 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	ASPA	P45381	313 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	RAP1GAP	P47736	663 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	PDE4C	Q08493	712 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	ZNF543	Q08ER8	600 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	KRT32	Q14532	448 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	MLANA	Q16655	118 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	KRTAP19-4	Q3LI73	84 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	BLOC1S2	Q6QNY1	142 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994		Q6ZUG5	572 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	ADGRF4	Q8IZF3	695 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	TMTC2	Q8N394	836 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	CTCFL	Q8NI51	663 aa	Predicted RBP	5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	MAML3	Q96JK9	1138 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	SLC9A7	Q96T83	725 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	TEX13B	Q9BXU2	312 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	TRPV6	Q9H1D0	765 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	SOX17	Q9H6I2	414 aa	Predicted RBP	5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	SLC38A10	Q9HBR0	1119 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	RNF146	Q9NTX7	359 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	CLDND1	Q9NY35	253 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	LMCD1	Q9NZU5	365 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	SLC12A7	Q9Y666	1083 aa		5.37	□□□□□ -1.55
ATXN3-231	ENST00000554994	EVPL	Q92817	2033 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	hCG_1642624	A0A1W2PR95	340 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CYSRT1	A8MQ03	144 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	KIF28P	B7ZC32	967 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	STXBP3	O00186	592 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	PRRG2	O14669	202 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CSPG5	O95196	566 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CD4	P01730	458 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ASGR1	P07306	291 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CTSB	P07858	339 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	C6orf222	P0C671	652 aa	Predicted RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	AKR1A1	P14550	325 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	MAOB	P27338	520 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CFP	P27918	469 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	KIF5B	P33176	963 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	COPB2	P35606	906 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ANTXR2	P58335	489 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CNTN2	Q02246	1040 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	SIGLEC14	Q08ET2	396 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	APOBR	Q0VD83	1088 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	MESP2	Q0VG99	397 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	SEC23A	Q15436	765 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	SMAD2	Q15796	467 aa	Known RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CDC37	Q16543	378 aa	Predicted RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ADCK5	Q3MIX3	580 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ASPRV1	Q53RT3	343 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	TCEAL5	Q5H9L2	206 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	MUM1L1	Q5H9M0	696 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	GPATCH4	Q5T3I0	446 aa	Known RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CCSAP	Q6IQ19	270 aa	Predicted RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	OGFOD3	Q6PK18	319 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	EEPD1	Q7L9B9	569 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	RPAIN	Q86UA6	219 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	MB21D2	Q8IYB1	491 aa	Predicted RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	RPUSD2	Q8IZ73	545 aa	Known RBP	5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ZNF654	Q8IZM8	581 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	TMEM105	Q8N8V8	129 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	SHCBP1	Q8NEM2	672 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	KLHDC9	Q8NEP7	349 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CHST13	Q8NET6	341 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	IGDCC4	Q8TDY8	1250 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	MISP3	Q96FF7	219 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	TMEM87B	Q96K49	555 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	CHRD	Q9H2X0	955 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ACSS3	Q9H6R3	686 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	ACAD9	Q9H845	621 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	C1GALT1	Q9NS00	363 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	DLL3	Q9NYJ7	618 aa		5.36	□□□□□ -1.55
ATXN3-231	ENST00000554994	FBXO40	Q9UH90	709 aa		5.36	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms