RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 DDX53Q86TM3 631 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 MRPL43Q8N983 215 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 SMRP1Q8NCR6 262 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 IFT74Q96LB3 600 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 DRC1Q96MC2 740 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 NECAB3Q96P71 396 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 ZBP1Q9H171 429 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 CLEC1BQ9P126 229 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 INPP5FQ9Y2H2 1132 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 PCDHGC5Q9Y5F6 944 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 MORC2Q9Y6X9 1032 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 ARL5CA6NH57 179 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 K7ELQ4 463 aaPredicted RBP17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 LINC01565O15544 149 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 B4GALT3O60512 393 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 GIT2Q14161 759 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 SMC1AQ14683 1233 aaKnown RBP17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 BMS1Q14692 1282 aaKnown RBP17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 TMEM119Q4V9L6 283 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 C1orf186Q6ZWK4 172 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 KCNK18Q7Z418 384 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 TMEM173Q86WV6 379 aaPredicted RBP17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 DAW1Q8N136 415 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 DEPTORQ8TB45 409 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 MICAL1Q8TDZ2 1067 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 KCNN1Q92952 543 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 SNX21Q969T3 373 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 TRIM6Q9C030 488 aaPredicted RBP17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 ENTPD7Q9NQZ7 604 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 CD207Q9UJ71 328 aa17.72■□□□□ 0.43
CCDC88C-209ENST00000554872 VWA3AA6NCI4 1184 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 E9PMD0 336 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 MBTPS2O43462 519 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 DDHD2O94830 711 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 PRKCBP05771 671 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 SRGAP2BP0DMP2 458 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 CTSAP10619 480 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 IL9P15248 144 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 CDC25AP30304 524 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 LONP1P36776 959 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 SLC11A1P49279 550 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 NDUFV1P49821 464 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 AFF1P51825 1210 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 MAPK7Q13164 816 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 PRPF4BQ13523 1007 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 LONRF3Q496Y0 759 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 PLPP4Q5VZY2 271 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 RINT1Q6NUQ1 792 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 ZNF280BQ86YH2 543 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 SYT2Q8N9I0 419 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 PNMA5Q96PV4 448 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 NTPCRQ9BSD7 190 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 RNF39Q9H2S5 420 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 NXF3Q9H4D5 531 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 PDZD7Q9H5P4 517 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 IGFLR1Q9H665 355 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 ARHGAP28Q9P2N2 729 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 DNAJB4Q9UDY4 337 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 KCNG1Q9UIX4 513 aa17.71■□□□□ 0.43
CCDC88C-209ENST00000554872 C2orf71A6NGG8 1288 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 C19orf67A6NJJ6 358 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 HIDE1A8MVS5 230 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 EFEMP2O95967 443 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 SYT1P21579 422 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 MLH1P40692 756 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 SLC12A3P55017 1021 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 TMC7Q7Z402 723 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 COLGALT2Q8IYK4 626 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 GSTCDQ8NEC7 633 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 VN1R2Q8NFZ6 395 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 BCL7CQ8WUZ0 217 aaPredicted RBP17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 GAD1Q99259 594 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 RUSC1Q9BVN2 902 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 TMEM134Q9H6X4 195 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 RBM19Q9Y4C8 960 aaKnown RBP17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 HES2Q9Y543 173 aa17.7■□□□□ 0.42
CCDC88C-209ENST00000554872 NT5C1B-RDH14C9J2C7 533 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 HIP1RO75146 1068 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 CSPG5O95196 566 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 NPTXRO95502 500 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 ALDH2P05091 517 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 HOXB8P17481 243 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 NPTX2P47972 431 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 ZP2Q05996 745 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 GRIK3Q13003 919 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 RESTQ13127 1097 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 DMP1Q13316 513 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 DCAF4L1Q3SXM0 396 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 RBM23Q86U06 439 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 ADHFE1Q8IWW8 467 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 GPR65Q8IYL9 337 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 RNF168Q8IYW5 571 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 VPS52Q8N1B4 723 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 SPIRE2Q8WWL2 714 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 FAM193BQ96PV7 902 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 POP1Q99575 1024 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 ADPGKQ9BRR6 497 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 VN1R3Q9BXE9 311 aa17.69■□□□□ 0.42
CCDC88C-209ENST00000554872 VPS37CA5D8V6 355 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 TTLL13PA6NNM8 815 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms