RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 RIN2Q8WYP3 895 aaPredicted RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 FDXACB1Q9BRP7 624 aaPredicted RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 NIFKQ9BYG3 293 aaKnown RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 RHOBTB2Q9BYZ6 727 aa13.21□□□□□ -0.29
SRP54-203ENST00000553544 TBC1D17Q9HA65 648 aa13.21□□□□□ -0.29
SRP54-203ENST00000553544 KCNMB3Q9NPA1 279 aa13.21□□□□□ -0.29
SRP54-203ENST00000553544 SUCLA2Q9P2R7 463 aaPredicted RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 EPS15L1Q9UBC2 864 aa13.21□□□□□ -0.29
SRP54-203ENST00000553544 DDX25Q9UHL0 483 aaKnown RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 CA14Q9ULX7 337 aa13.21□□□□□ -0.29
SRP54-203ENST00000553544 PIN4Q9Y237 131 aaKnown RBP13.21□□□□□ -0.29
SRP54-203ENST00000553544 MEIS3P2A8K0S8 358 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 CHMP2AO43633 222 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 JAK2O60674 1132 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 N4BP1O75113 896 aaKnown RBP13.2□□□□□ -0.3
SRP54-203ENST00000553544 STBD1O95210 358 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 ADH1AP07327 375 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 SP9P0CG40 484 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 GCFC2P16383 781 aaKnown RBP13.2□□□□□ -0.3
SRP54-203ENST00000553544 NR5A1Q13285 461 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 DRP2Q13474 957 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 SPECC1Q5M775 1068 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 PIK3AP1Q6ZUJ8 805 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 CATSPER4Q7RTX7 472 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 ZNF410Q86VK4 478 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 RHPN2Q8IUC4 686 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 BORCS6Q96GS4 357 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 TMEM175Q9BSA9 504 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 MAN1C1Q9NR34 630 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.2□□□□□ -0.3
SRP54-203ENST00000553544 LIMCH1Q9UPQ0 1083 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 PCDHB2Q9Y5E7 798 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 NCOR2Q9Y618 2525 aa13.2□□□□□ -0.3
SRP54-203ENST00000553544 IGKV6-21A0A0C4DH24 114 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 C2CD2LO14523 706 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 NRP1O14786 923 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 TBX3O15119 743 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 DDHD2O94830 711 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 URODP06132 367 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 DCNP07585 359 aaKnown RBP13.19□□□□□ -0.3
SRP54-203ENST00000553544 KRT2P35908 639 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 RBM25P49756 843 aaKnown RBP13.19□□□□□ -0.3
SRP54-203ENST00000553544 MTERF2Q49AM1 385 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 XKR3Q5GH77 459 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 MIER3Q7Z3K6 550 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 MRPL10Q7Z7H8 261 aaKnown RBP13.19□□□□□ -0.3
SRP54-203ENST00000553544 HDAC7Q8WUI4 952 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 HAS1Q92839 578 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 FAM20AQ96MK3 541 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 RPS6KC1Q96S38 1066 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 CEP89Q96ST8 783 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 DLL3Q9NYJ7 618 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 VAV3Q9UKW4 847 aa13.19□□□□□ -0.3
SRP54-203ENST00000553544 CACNA1BQ00975 2339 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 CEP250Q9BV73 2442 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 FAM205CA6NFA0 338 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 DDX11L8A8MPP1 907 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 EML1O00423 815 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 INPPL1O15357 1258 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 GLUD1P00367 558 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 SOD2P04179 222 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 LAMP2P13473 410 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 PPP2R5CQ13362 524 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 DCLRE1AQ6PJP8 1040 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 AGMOQ6ZNB7 445 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 DCLK2Q8N568 766 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 GPR152Q8TDT2 470 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 SMG7Q92540 1137 aaKnown RBP13.18□□□□□ -0.3
SRP54-203ENST00000553544 SHDQ96IW2 340 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 MYADMQ96S97 322 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 NAP1L4Q99733 375 aaKnown RBP13.18□□□□□ -0.3
SRP54-203ENST00000553544 JPH2Q9BR39 696 aaPredicted RBP13.18□□□□□ -0.3
SRP54-203ENST00000553544 RSAD1Q9HA92 442 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 PIDD1Q9HB75 910 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 UBN1Q9NPG3 1134 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 SEPT9Q9UHD8 586 aaPredicted RBP13.18□□□□□ -0.3
SRP54-203ENST00000553544 TPRP12270 2363 aaKnown RBP13.18□□□□□ -0.3
SRP54-203ENST00000553544 EPG5Q9HCE0 2579 aa13.18□□□□□ -0.3
SRP54-203ENST00000553544 CLUHO75153 1309 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 CNTNAP2Q9UHC6 1331 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 DNAH14Q0VDD8 3507 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 BTBD18B2RXH4 712 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 TEX28O15482 410 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 GAS2O43903 313 aaKnown RBP13.17□□□□□ -0.3
SRP54-203ENST00000553544 CCNT1O60563 726 aaKnown RBP13.17□□□□□ -0.3
SRP54-203ENST00000553544 MAFO75444 373 aaPredicted RBP13.17□□□□□ -0.3
SRP54-203ENST00000553544 C1RP00736 705 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 POMCP01189 267 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 SDHBP21912 280 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 KIAA0319Q5VV43 1072 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 TAS1R1Q7RTX1 841 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 KSR1Q8IVT5 923 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
SRP54-203ENST00000553544 NLRP4Q96MN2 994 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 LLPHQ9BRT6 129 aaKnown RBP13.17□□□□□ -0.3
SRP54-203ENST00000553544 PLEKHA4Q9H4M7 779 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 RXFP1Q9HBX9 757 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 BRMS1Q9HCU9 246 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 ARHGEF3Q9NR81 526 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 SLC2A4RGQ9NR83 387 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms