RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ALDH7A1P49419 539 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 SLC12A3P55017 1021 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 PPP2R5AQ15172 486 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 ZRSR1Q15695 479 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 NT5DC1Q5TFE4 455 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 PDE12Q6L8Q7 609 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 FAM173BQ6P4H8 233 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 SLC27A1Q6PCB7 646 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 CABP7Q86V35 215 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 EFHBQ8N7U6 833 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 SYT2Q8N9I0 419 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 GSTCDQ8NEC7 633 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 DEPTORQ8TB45 409 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 MICAL1Q8TDZ2 1067 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 BCL7CQ8WUZ0 217 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 FAM122AQ96E09 287 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 AK8Q96MA6 479 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 DCBLD2Q96PD2 775 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 UHRF1Q96T88 793 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 GAD1Q99259 594 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 NT5C3AQ9H0P0 336 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 NXF3Q9H4D5 531 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 PDZD7Q9H5P4 517 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 IGFLR1Q9H665 355 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 UBN1Q9NPG3 1134 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 MIOSQ9NXC5 875 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 KANSL3Q9P2N6 904 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 DNAJB4Q9UDY4 337 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 PUF60Q9UHX1 559 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 FNDC1Q4ZHG4 1894 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 GRXCR2A6NFK2 248 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 ARL5CA6NH57 179 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 PER2O15055 1255 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 STX6O43752 255 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 ZC3H11AO75152 810 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 TBX10O75333 385 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 NPTXRO95502 500 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 POMCP01189 267 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 PLA2G4BP0C869 781 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 LONP1P36776 959 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 NPTX2P47972 431 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 NRIP1P48552 1158 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 EFNA5P52803 228 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 KRT17Q04695 432 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 PRPF4BQ13523 1007 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 MAPK6Q16659 721 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 DUSP6Q16828 381 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 RBM23Q86U06 439 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 VN1R2Q8NFZ6 395 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 URGCPQ8TCY9 931 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 IGSF21Q96ID5 467 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 IFT74Q96LB3 600 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 ZFP42Q96MM3 310 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 TCF25Q9BQ70 676 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 TMEM175Q9BSA9 504 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 TIPINQ9BVW5 301 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 VN1R3Q9BXE9 311 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 TLE6Q9H808 572 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 NGRNQ9NPE2 291 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 CLEC1BQ9P126 229 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 FBXO2Q9UK22 296 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 GIT1Q9Y2X7 761 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 ARID2Q68CP9 1835 aa11.34□□□□□ -0.59
CCDC88C-206ENST00000553437 MYO7AQ13402 2215 aa11.33□□□□□ -0.59
CCDC88C-206ENST00000553437 CARNS1A5YM72 827 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 SFI1A8K8P3 1242 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 HIDE1A8MVS5 230 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 TNFRSF10AO00220 468 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 N4BP3O15049 544 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 GLP2RO95838 553 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 IL9P15248 144 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 AKAP5P24588 427 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 MARCKSP29966 332 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 MLH1P40692 756 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 UBA7P41226 1012 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 SCNN1GP51170 649 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 PEX3P56589 373 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 RNASELQ05823 741 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 DSC1Q08554 894 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 KCNC3Q14003 757 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 ARSHQ5FYA8 562 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 PLPP4Q5VZY2 271 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 EEF1DP3Q658K8 133 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 PTCRAQ6ISU1 281 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 EP400NLQ6ZTU2 488 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 USP49Q70CQ1 688 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 TAS1R3Q7RTX0 852 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 DDX53Q86TM3 631 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 COLGALT2Q8IYK4 626 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 MRPL43Q8N983 215 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 PPP2R3CQ969Q6 453 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 MSLNLQ96KJ4 702 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 DRC1Q96MC2 740 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 USP28Q96RU2 1077 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 NTPCRQ9BSD7 190 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 APOL6Q9BWW8 343 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 TRIM6Q9C030 488 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 GBP3Q9H0R5 595 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 TMEM134Q9H6X4 195 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 C17orf75Q9HAS0 396 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms