RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 PLS3P13797 630 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 SCP2P22307 547 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 NASPP49321 788 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-204ENST00000553324 CAMK1Q14012 370 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 ATL3Q6DD88 541 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 DAW1Q8N136 415 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 KRI1Q8N9T8 703 aaKnown RBP16.9■□□□□ 0.3
SHMT2-204ENST00000553324 SPIRE2Q8WWL2 714 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 PABPC5Q96DU9 382 aaKnown RBP16.9■□□□□ 0.3
SHMT2-204ENST00000553324 TMEM169Q96HH4 297 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 POLD4Q9HCU8 107 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 FBXO2Q9UK22 296 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-204ENST00000553324 ODF2LQ9ULJ1 636 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 RALGAPA2Q2PPJ7 1873 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 ARL5CA6NH57 179 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 MEIS3P2A8K0S8 358 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 ZC3H11AO75152 810 aaKnown RBP eCLIP16.89■□□□□ 0.29
SHMT2-204ENST00000553324 NPTXRO95502 500 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 ZSCAN22P10073 491 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-204ENST00000553324 LIG1P18858 919 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 PLCG1P19174 1290 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 DNAJB1P25685 340 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 GRIN1Q05586 938 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 KARSQ15046 597 aaKnown RBP16.89■□□□□ 0.29
SHMT2-204ENST00000553324 STK38Q15208 465 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 DCAF4L1Q3SXM0 396 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 SLC39A11Q8N1S5 342 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 TMEM175Q9BSA9 504 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 NRDE2Q9H7Z3 1164 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 UBE2ZQ9H832 354 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-204ENST00000553324 ARHGAP28Q9P2N2 729 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 HCSTQ9UBK5 93 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 ARID2Q68CP9 1835 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 ZMYM2Q9UBW7 1377 aa16.89■□□□□ 0.29
SHMT2-204ENST00000553324 SFI1A8K8P3 1242 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 PPP6R2O75170 966 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 GALTP07902 379 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 ABCD1P33897 745 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 STRN3Q13033 797 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 MAPK7Q13164 816 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 COL19A1Q14993 1142 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 PUS10Q3MIT2 529 aaKnown RBP16.88■□□□□ 0.29
SHMT2-204ENST00000553324 ARSHQ5FYA8 562 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 ATF7IP2Q5U623 682 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 RRAGBQ5VZM2 374 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 LINC00301Q8NCQ3 95 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 LARP4BQ92615 738 aaKnown RBP16.88■□□□□ 0.29
SHMT2-204ENST00000553324 RAD54LQ92698 747 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 EPSTI1Q96J88 318 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 GAD1Q99259 594 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 CDCA3Q99618 268 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-204ENST00000553324 KIFC3Q9BVG8 833 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 MRPL4Q9BYD3 311 aaKnown RBP16.88■□□□□ 0.29
SHMT2-204ENST00000553324 PDZD7Q9H5P4 517 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 STK17AQ9UEE5 414 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 PARP2Q9UGN5 583 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 CFAP45Q9UL16 551 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 TNFSF13BQ9Y275 285 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 FAN1Q9Y2M0 1017 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 HES2Q9Y543 173 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 VCANP13611 3396 aa16.88■□□□□ 0.29
SHMT2-204ENST00000553324 DLL1O00548 723 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 SPTLC2O15270 562 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 YEATS4O95619 227 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 POMCP01189 267 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 KRT18P05783 430 aaKnown RBP16.87■□□□□ 0.29
SHMT2-204ENST00000553324 TFF2Q03403 129 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 RAD51AP2Q09MP3 1159 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 CCDC73Q6ZRK6 1079 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 TMC7Q7Z402 723 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 GPBP1Q86WP2 473 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 CDR2LQ86X02 465 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-204ENST00000553324 TCF25Q9BQ70 676 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 APOL6Q9BWW8 343 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 GBP3Q9H0R5 595 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 RNF39Q9H2S5 420 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 NXF3Q9H4D5 531 aaKnown RBP16.87■□□□□ 0.29
SHMT2-204ENST00000553324 TLE6Q9H808 572 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 BLOC1S4Q9NUP1 217 aa16.87■□□□□ 0.29
SHMT2-204ENST00000553324 FNDC1Q4ZHG4 1894 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-204ENST00000553324 FSCN2O14926 492 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 F13A1P00488 732 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 KCNA5P22460 613 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 AKAP5P24588 427 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 IRS1P35568 1242 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 PBX3P40426 434 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 MLH1P40692 756 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 ERVFC1P60507 584 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 HYAL1Q12794 435 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 GIT2Q14161 759 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 BECN1Q14457 450 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 DHX8Q14562 1220 aaKnown RBP16.86■□□□□ 0.29
SHMT2-204ENST00000553324 MCM6Q14566 821 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 CTC1Q2NKJ3 1217 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 LEXMQ3ZCV2 418 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 SPECC1Q5M775 1068 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 NT5DC1Q5TFE4 455 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 EP400NLQ6ZTU2 488 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 DDX53Q86TM3 631 aaKnown RBP16.86■□□□□ 0.29
SHMT2-204ENST00000553324 ZNF280BQ86YH2 543 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms