RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SIX1Q15475 284 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 KNOP1Q1ED39 458 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RFWD3Q6PCD5 774 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 LONP2Q86WA8 852 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CATSPER3Q86XQ3 398 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 C1orf54Q8WWF1 131 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RFFLQ8WZ73 363 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 TGS1Q96RS0 853 aaKnown RBP5.22□□□□□ -1.57
LIMA1-214ENST00000552783 RXFP1Q9HBX9 757 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 CHKBQ9Y259 395 aa5.22□□□□□ -1.57
LIMA1-214ENST00000552783 A0A0A6YYK5 440 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-214ENST00000552783 FOXN3O00409 490 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-214ENST00000552783 KIF3CO14782 793 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 TGFB1I1O43294 461 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 RPS6KA4O75676 772 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 UNC5CO95185 931 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 CALCAP01258 141 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 CCNB1P14635 433 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 EPHB2P29323 1055 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 VPS41P49754 854 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 WDR4P57081 412 aaKnown RBP5.21□□□□□ -1.57
LIMA1-214ENST00000552783 SHROOM1Q2M3G4 852 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-214ENST00000552783 PPP1R15BQ5SWA1 713 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 C10orf76Q5T2E6 689 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 PHLDB3Q6NSJ2 640 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF449Q6P9G9 518 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 MIGA2Q7L4E1 593 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 FAM13CQ8NE31 585 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 CKAP2Q8WWK9 683 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 BORCS6Q96GS4 357 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 SH3GL3Q99963 347 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA1683Q9H0B3 1180 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 CARD9Q9H257 536 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 RIOX1Q9H6W3 641 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 CD209Q9NNX6 404 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 METTL5Q9NRN9 209 aaKnown RBP5.21□□□□□ -1.57
LIMA1-214ENST00000552783 TCEAL9Q9UHQ7 104 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 ARL2BPQ9Y2Y0 163 aa5.21□□□□□ -1.57
LIMA1-214ENST00000552783 PHLPP1O60346 1717 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ARFGEF1Q9Y6D6 1849 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PHF2O75151 1096 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SUN1O94901 812 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 GNA14O95837 355 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NR3C1P04150 777 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DLATP10515 647 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TAC1P20366 129 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 COMTP21964 271 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 RFC5P40937 340 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PEX5P50542 639 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ZNF131P52739 623 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 UBXN2AP68543 259 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 GPSM2P81274 684 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 IFI16Q16666 785 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NBPF20Q3BBV1 942 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TBC1D10BQ4KMP7 808 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PRR16Q569H4 304 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 HP1BP3Q5SSJ5 553 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 EPM2AIP1Q7L775 607 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CCDC65Q8IXS2 484 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SRRM1Q8IYB3 904 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 RDH13Q8NBN7 331 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CCHCR1Q8TD31 782 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 KAT5Q92993 513 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ART4Q93070 314 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SLC7A6OSQ96CW6 309 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ERP27Q96DN0 273 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DHX36Q9H2U1 1008 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DBNDD1Q9H9R9 158 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 JMJD4Q9H9V9 463 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CNOT7Q9UIV1 285 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DNAJC12Q9UKB3 198 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SUGT1Q9Y2Z0 365 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 LRRC42Q9Y546 428 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DDX60LQ5H9U9 1706 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TISP43B9A030 160 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PLSCR1O15162 318 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SPAG7O75391 227 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SERPINB2P05120 415 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SPATA31C1P0DKV0 1188 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ALAS1P13196 640 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 RARGP13631 454 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 BRAFP15056 766 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PECAM1P16284 738 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CTNNA2P26232 953 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NMT1P30419 496 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SOX5P35711 763 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PTDSS1P48651 473 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CCNG1P51959 295 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SESN3P58005 492 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ICA1Q05084 483 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DNAJC3Q13217 504 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 GRAPQ13588 217 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 MESDQ14696 234 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 EDRF1Q3B7T1 1238 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 AP1ARQ63HQ0 302 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NSMFQ6X4W1 530 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 FRMD5Q7Z6J6 570 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 CCDC105Q8IYK2 499 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 SYCE1Q8N0S2 351 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ZSWIM2Q8NEG5 633 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms