RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 RPS9P46781 194 aaKnown RBP16.28■□□□□ 0.2
VPS29-209ENST00000551655 NAPAP54920 295 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 PRKCEQ02156 737 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 DSG1Q02413 1049 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 CSRP2Q16527 193 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 B4GALNT3Q6L9W6 998 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 ZNF746Q6NUN9 644 aaPredicted RBP16.28■□□□□ 0.2
VPS29-209ENST00000551655 LILRA6Q6PI73 481 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 KSR1Q8IVT5 923 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 RSPH1Q8WYR4 309 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 PHF20Q9BVI0 1012 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 RIC8AQ9NPQ8 531 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 STK39Q9UEW8 545 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 NDRG2Q9UN36 371 aaKnown RBP16.28■□□□□ 0.2
VPS29-209ENST00000551655 SAMM50Q9Y512 469 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 PCDHA10Q9Y5I2 948 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 HIP1O00291 1037 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 GNAQP50148 359 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 RAB27AP51159 221 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 ADCY7P51828 1080 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 IL31Q6EBC2 164 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 RSPO2Q6UXX9 243 aaPredicted RBP16.27■□□□□ 0.2
VPS29-209ENST00000551655 NFXL1Q6ZNB6 911 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 NIPA1Q7RTP0 329 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 CATSPER4Q7RTX7 472 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 COLGALT2Q8IYK4 626 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 CELF5Q8N6W0 485 aaKnown RBP16.27■□□□□ 0.2
VPS29-209ENST00000551655 HDAC7Q8WUI4 952 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 PGBD4Q96DM1 585 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 FAM167AQ96KS9 214 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 FAM126AQ9BYI3 521 aaPredicted RBP16.27■□□□□ 0.2
VPS29-209ENST00000551655 PLA2G2FQ9BZM2 168 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 RXFP3Q9NSD7 469 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 SSX2IPQ9Y2D8 614 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 ZFP37Q9Y6Q3 630 aaPredicted RBP16.27■□□□□ 0.2
VPS29-209ENST00000551655 NOTCH4Q99466 2003 aa16.27■□□□□ 0.2
VPS29-209ENST00000551655 AKAP13Q12802 2813 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 CCL16O15467 120 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 HRO43593 1189 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 LRP3O75074 770 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 PFKPQ01813 784 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 ADCY1Q08828 1119 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 SIM2Q14190 667 aaPredicted RBP16.26■□□□□ 0.19
VPS29-209ENST00000551655 CCDC6Q16204 474 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 JAKMIP3Q5VZ66 844 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 TMTC3Q6ZXV5 915 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 MTSS1LQ765P7 747 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 SMAP1Q8IYB5 467 aaPredicted RBP16.26■□□□□ 0.19
VPS29-209ENST00000551655 ZNF710Q8N1W2 664 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 ING5Q8WYH8 240 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 RABGGTAQ92696 567 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 GPR62Q9BZJ7 368 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 TCEAL9Q9UHQ7 104 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 POLIQ9UNA4 740 aa16.26■□□□□ 0.19
VPS29-209ENST00000551655 TDRD15B5MCY1 1934 aaKnown RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 NCAM2O15394 837 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 FOSP01100 380 aaPredicted RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 HOXC13P31276 330 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 CLK2P49760 499 aaKnown RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 SF3A2Q15428 464 aaKnown RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 TARBP2Q15633 366 aaKnown RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 MTERF2Q49AM1 385 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 UBXN11Q5T124 520 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 PRSS55Q6UWB4 352 aaPredicted RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 UNQ6494/PRO21346Q6UXR6 183 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 ZNF852Q6ZMS4 543 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.25■□□□□ 0.19
VPS29-209ENST00000551655 RHPN2Q8IUC4 686 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 ZNF687Q8N1G0 1237 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 MAP4K1Q92918 833 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 NLRP4Q96MN2 994 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 CHST7Q9NS84 486 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 NRBP2Q9NSY0 501 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 HCFC1R1Q9NWW0 138 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 MIOSQ9NXC5 875 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 LAMA1P25391 3075 aa16.25■□□□□ 0.19
VPS29-209ENST00000551655 CNTNAP5Q8WYK1 1306 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 CHURC1-FNTBB4DL54 471 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 SH2B2O14492 632 aaPredicted RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 TM4SF5O14894 197 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 PRC1O43663 620 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 FNTBP49356 437 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 SATB1Q01826 763 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 MRPL10Q7Z7H8 261 aaKnown RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 NPAS3Q8IXF0 933 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 CRYGNQ8WXF5 182 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 DDX1Q92499 740 aaKnown RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 CEP89Q96ST8 783 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 NELL2Q99435 816 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 CHRDQ9H2X0 955 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 OSBPL3Q9H4L5 887 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 TBC1D22BQ9NU19 505 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 AGPAT5Q9NUQ2 364 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 CACNG4Q9UBN1 327 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 SEPT9Q9UHD8 586 aaPredicted RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 GCN1Q92616 2671 aaKnown RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 COL4A2P08572 1712 aa16.24■□□□□ 0.19
VPS29-209ENST00000551655 DSPP15924 2871 aaKnown RBP16.24■□□□□ 0.19
VPS29-209ENST00000551655 SMCO2A6NFE2 343 aa16.23■□□□□ 0.19
VPS29-209ENST00000551655 CCDC69A6NI79 296 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms