RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ADCY1Q08828 1119 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 TRAF1Q13077 416 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ALX1Q15699 326 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 IFIT1BQ5T764 474 aaKnown RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 STPG1Q5TH74 334 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF852Q6ZMS4 543 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 TAS1R1Q7RTX1 841 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 GRASPQ7Z6J2 395 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF280BQ86YH2 543 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ENAHQ8N8S7 591 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 KDF1Q8NAX2 398 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 NELL1Q92832 810 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 GPRASP2Q96D09 838 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 CDHR1Q96JP9 859 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 FAM227BQ96M60 508 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 FAM193BQ96PV7 902 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 NELL2Q99435 816 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 SDF4Q9BRK5 362 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 DDX23Q9BUQ8 820 aaKnown RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 VN1R3Q9BXE9 311 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 FAM126AQ9BYI3 521 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 OSBPL6Q9BZF3 934 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 NT5C3AQ9H0P0 336 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 SMOC1Q9H4F8 434 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 RNF41Q9H4P4 317 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 VRTNQ9H8Y1 702 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 LMAN1LQ9HAT1 526 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 JPH1Q9HDC5 661 aaPredicted RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 HEBP1Q9NRV9 189 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 RXFP3Q9NSD7 469 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ZSWIM5Q9P217 1185 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 DPP7Q9UHL4 492 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 MAD2L2Q9UI95 211 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 FAN1Q9Y2M0 1017 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ADAMTS20P59510 1910 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 GPR179Q6PRD1 2367 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 DOCK6Q96HP0 2047 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PNMA6FA0A0J9YX94 578 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 TAF4O00268 1085 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 TEX28O15482 410 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 HBP1O60381 514 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 FOXD2O60548 495 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 GPR32O75388 356 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 URODP06132 367 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ADH1AP07327 375 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ITGB5P18084 799 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 CLCN3P51790 818 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PFKPQ01813 784 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF252P-AS1Q0IIN9 211 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 NR1H3Q13133 447 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 MCMDC2Q4G0Z9 681 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 SOWAHCQ53LP3 525 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 NOMO2Q5JPE7 1267 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF484Q5JVG2 852 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 KIAA1211LQ6NV74 962 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 SWSAP1Q6NVH7 229 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PDXDC2PQ6P474 469 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 GLB1LQ6UWU2 654 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 Q6ZNB5 142 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PLPPR4Q7Z2D5 763 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 FAM160A2Q8N612 972 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 CMASQ8NFW8 434 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 OTUD7AQ8TE49 926 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 MAP4K1Q92918 833 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 CLDN23Q96B33 292 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF707Q96C28 371 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 UBAC1Q9BSL1 405 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PHF20Q9BVI0 1012 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 SCNM1Q9BWG6 230 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PRR14Q9BWN1 585 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ADAMTS10Q9H324 1103 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 PRMT8Q9NR22 394 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 HELLSQ9NRZ9 838 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ZBTB40Q9NUA8 1239 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 TBC1D13Q9NVG8 400 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 DDX19BQ9UMR2 479 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 MRPS17Q9Y2R5 130 aaKnown RBP5.42□□□□□ -1.54
LIMS1-214ENST00000542845 ASPMQ8IZT6 3477 aa5.42□□□□□ -1.54
LIMS1-214ENST00000542845 FASNP49327 2511 aaKnown RBP5.41□□□□□ -1.54
LIMS1-214ENST00000542845 GREB1Q4ZG55 1949 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 A0A0D9SFI3 127 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 A0A0U1RQF3 1178 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 TMEM8BA6NDV4 472 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 GOLGA8CPA6NN73 597 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 MEIS3P2A8K0S8 358 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 CYSRT1A8MQ03 144 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 NRP1O14786 923 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 TM4SF5O14894 197 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 DDHD2O94830 711 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 ATG7O95352 703 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 SKIP12755 728 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 RPL17P18621 184 aaKnown RBP5.41□□□□□ -1.54
LIMS1-214ENST00000542845 KIF5BP33176 963 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 RPS9P46781 194 aaKnown RBP5.41□□□□□ -1.54
LIMS1-214ENST00000542845 OR1G1P47890 313 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 CXCL12P48061 93 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 CCR3P51677 355 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 SATB1Q01826 763 aa5.41□□□□□ -1.54
LIMS1-214ENST00000542845 NMIQ13287 307 aaPredicted RBP5.41□□□□□ -1.54
LIMS1-214ENST00000542845 FZD5Q13467 585 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms