RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 TET1Q8NFU7 2136 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 DPYSL4O14531 572 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 B4GALT5O43286 388 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 PRKCBP05771 671 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 ARF4P18085 180 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-207ENST00000542790 LIG1P18858 919 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 CMA1P23946 247 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 ZNF131P52739 623 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 AMPD3Q01432 767 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 GRIN2CQ14957 1233 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 TMEM132AQ24JP5 1023 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 UBXN11Q5T124 520 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 SLC27A1Q6PCB7 646 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 ABI1Q8IZP0 508 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 MYCT1Q8N699 235 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 RSPH1Q8WYR4 309 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 DDX12PQ92771 950 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 DHX58Q96C10 678 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 CPB2Q96IY4 423 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 SAMD11Q96NU1 681 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 TGS1Q96RS0 853 aaKnown RBP13.66□□□□□ -0.22
VPS33A-207ENST00000542790 ZHX3Q9H4I2 956 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 ARHGAP28Q9P2N2 729 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 KCNH3Q9ULD8 1083 aa13.66□□□□□ -0.22
VPS33A-207ENST00000542790 CNTNAP2Q9UHC6 1331 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 MYMKA6NI61 221 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 TBKBP1A7MCY6 615 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 SLC16A4O15374 487 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 POLR2DO15514 142 aaKnown RBP13.65□□□□□ -0.22
VPS33A-207ENST00000542790 ARHGEF15O94989 841 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 FGFR1P11362 822 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 ERVK-21P61565 698 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 E2F4Q16254 413 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 DYMQ7RTS9 669 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 MRPL10Q7Z7H8 261 aaKnown RBP13.65□□□□□ -0.22
VPS33A-207ENST00000542790 HACE1Q8IYU2 909 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 SLC17A8Q8NDX2 589 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 TMEM161BQ8NDZ6 487 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 ARNTL2Q8WYA1 636 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 CDX2Q99626 313 aaPredicted RBP13.65□□□□□ -0.22
VPS33A-207ENST00000542790 TRIM6Q9C030 488 aaPredicted RBP13.65□□□□□ -0.22
VPS33A-207ENST00000542790 TMEM117Q9H0C3 514 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 TNMDQ9H2S6 317 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 CERS4Q9HA82 394 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 MAGEF1Q9HAY2 307 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 UBN1Q9NPG3 1134 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 RWDD3Q9Y3V2 267 aa13.65□□□□□ -0.22
VPS33A-207ENST00000542790 A0A1W2PQ27 194 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 A0A1W2PQ64 194 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 A0A1W2PQD8 194 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 N4BP3O15049 544 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 TRAK2O60296 914 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 ATF7P17544 494 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 ABCD1P33897 745 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 GATMP50440 423 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 STRN3Q13033 797 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 PAN2Q504Q3 1202 aaKnown RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 ATF7IP2Q5U623 682 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 GLB1LQ6UWU2 654 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 APBB1IPQ7Z5R6 666 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 FAM178BQ8IXR5 827 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 KCNN1Q92952 543 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 CLP1Q92989 425 aaKnown RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 CASD1Q96PB1 797 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 ADPGKQ9BRR6 497 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 EIF2AQ9BY44 585 aaKnown RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 MRPL4Q9BYD3 311 aaKnown RBP13.64□□□□□ -0.23
VPS33A-207ENST00000542790 KBTBD4Q9NVX7 518 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 CHMP5Q9NZZ3 219 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 SEL1LQ9UBV2 794 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 MTUS1Q9ULD2 1270 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 IPPQ9Y573 584 aa13.64□□□□□ -0.23
VPS33A-207ENST00000542790 LAMA3Q16787 3333 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 SIP14410 1827 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 A0A1B0GVL5 298 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 GOLGA6L4A6NEF3 574 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 RB1P06400 928 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 MAPTP10636 758 aaKnown RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 ITGA4P13612 1032 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 PFKFB1P16118 471 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 GAP43P17677 238 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 BMPR1AP36894 532 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 NCKAP1LP55160 1127 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 CLLU1OSQ5K130 101 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 NT5DC1Q5TFE4 455 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 HAUS6Q7Z4H7 955 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 CDR2LQ86X02 465 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 TMEM192Q8IY95 271 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 CEP57L1Q8IYX8 460 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 SMG8Q8ND04 991 aaKnown RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 HELQQ8TDG4 1101 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 LPPQ93052 612 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 GUCD1Q96NT3 240 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 GAS2L1Q99501 681 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 C17orf80Q9BSJ5 609 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 PLVAPQ9BX97 442 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 MRPL9Q9BYD2 267 aaKnown RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 PRDM12Q9H4Q4 367 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 PDZD7Q9H5P4 517 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 GDPD2Q9HCC8 539 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms