RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PIGRP01833 764 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 MORC3Q14149 939 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 BMT2Q1RMZ1 405 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 ISM2Q6H9L7 571 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 TWF2Q6IBS0 349 aaKnown RBP18.78■□□□□ 0.6
LIG1-204ENST00000542460 RTN4RL1Q86UN2 441 aaPredicted RBP18.78■□□□□ 0.6
LIG1-204ENST00000542460 MYOCDQ8IZQ8 938 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 SYCP3Q8IZU3 236 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 GDF15Q99988 308 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.78■□□□□ 0.66e-10■■■□□ 17.7
LIG1-204ENST00000542460 TRAIPQ9BWF2 469 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 RGS18Q9NS28 235 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 GDAQ9Y2T3 454 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 TOM1L1O75674 476 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 LIG4P49917 911 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 SLC27A1Q6PCB7 646 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 OTOP2Q7RTS6 562 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 GUF1Q8N442 669 aaKnown RBP18.77■□□□□ 0.6
LIG1-204ENST00000542460 ADPGKQ9BRR6 497 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 PDZD7Q9H5P4 517 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 C1orf112Q9NSG2 853 aa18.77■□□□□ 0.6
LIG1-204ENST00000542460 SCN5AQ14524 2016 aa18.77■□□□□ 0.59
LIG1-204ENST00000542460 HOXD13P35453 343 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 KNOP1Q1ED39 458 aaKnown RBP18.76■□□□□ 0.59
LIG1-204ENST00000542460 COBLL1Q53SF7 1204 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 SLC24A5Q71RS6 500 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 APBB1IPQ7Z5R6 666 aaPredicted RBP18.76■□□□□ 0.59
LIG1-204ENST00000542460 SMYD4Q8IYR2 804 aaPredicted RBP18.76■□□□□ 0.59
LIG1-204ENST00000542460 LINC01599Q8WXQ3 324 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 TCHPQ9BT92 498 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 PTPRHQ9HD43 1115 aa18.76■□□□□ 0.59
LIG1-204ENST00000542460 A0A0U1RQF3 1178 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 BMP6P22004 513 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 PROZP22891 400 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 FXR1P51114 621 aaKnown RBP eCLIP18.75■□□□□ 0.59
LIG1-204ENST00000542460 CDR2LQ86X02 465 aaPredicted RBP18.75■□□□□ 0.59
LIG1-204ENST00000542460 NELFCDQ8IXH7 590 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 HERVK_113Q902F9 699 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 UBE2OQ9C0C9 1292 aaKnown RBP18.75■□□□□ 0.59
LIG1-204ENST00000542460 GBP3Q9H0R5 595 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 MTIF3Q9H2K0 278 aaKnown RBP18.75■□□□□ 0.59
LIG1-204ENST00000542460 MAPK8IP1Q9UQF2 711 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 TRIOBPQ9H2D6 2365 aa18.75■□□□□ 0.59
LIG1-204ENST00000542460 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 C9IYK1 514 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 CLDN3O15551 220 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 LETM1O95202 739 aaPredicted RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 SKIP12755 728 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 PPP1R2P41236 205 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 PRCPP42785 496 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 RAB27AP51159 221 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 SNRPFP62306 86 aaKnown RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 DCAF4L1Q3SXM0 396 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 UBXN11Q5T124 520 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 EEF1DP3Q658K8 133 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 SLFN12LQ6IEE8 588 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 MPZL3Q6UWV2 235 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 TRIM6Q9C030 488 aaPredicted RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 FAM105AQ9NUU6 356 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 RNF216Q9NWF9 866 aaPredicted RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 ANKFY1Q9P2R3 1169 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 STYXL1Q9Y6J8 313 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ZBBXA8MT70 800 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ANKRD63C9JTQ0 380 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ABLIM1O14639 778 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ZNF623O75123 536 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 BMP8BP34820 402 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 KCNJ6P48051 423 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 WDR5P61964 334 aaKnown RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 FAM189BP81408 668 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 STIM1Q13586 685 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ZNF568Q3ZCX4 644 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 SLC39A4Q6P5W5 647 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 HS2ST1Q7LGA3 356 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 TET1Q8NFU7 2136 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ZBTB45Q96K62 511 aaPredicted RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 EIF2AQ9BY44 585 aaKnown RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 IKZF4Q9H2S9 585 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 CGNQ9P2M7 1197 aaKnown RBP18.74■□□□□ 0.59
LIG1-204ENST00000542460 PCDHB2Q9Y5E7 798 aa18.74■□□□□ 0.59
LIG1-204ENST00000542460 ZMYM2Q9UBW7 1377 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 PDXKO00764 312 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 TGFB1I1O43294 461 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 NPTXRO95502 500 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 AMHP03971 560 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 MCF2P10911 925 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 MATR3P43243 847 aaKnown RBP eCLIP18.73■□□□□ 0.59
LIG1-204ENST00000542460 MCL1Q07820 350 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 SASS6Q6UVJ0 657 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.73■□□□□ 0.59
LIG1-204ENST00000542460 ZBTB33Q86T24 672 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 ADSSL1Q8N142 457 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 GOLGA5Q8TBA6 731 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 PRO3102Q9H379 93 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 KCTD10Q9H3F6 313 aa18.73■□□□□ 0.59
LIG1-204ENST00000542460 A0A0B4J269 797 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 PPP1R3GB7ZBB8 358 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 TISP43B9A030 160 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 EOMESO95936 686 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 GARTP22102 1010 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms