RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 KCNMB3Q9NPA1 279 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 MAN1C1Q9NR34 630 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 BMP2KQ9NSY1 1161 aaPredicted RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 PRG3Q9Y2Y8 225 aaPredicted RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 CCDC195A0A1B0GUA6 201 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 TBX3O15119 743 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 GLUD1P00367 558 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 XBP1P17861 261 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 AXLP30530 894 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 YWHABP31946 246 aaKnown RBP17.21■□□□□ 0.35
RTN3-211ENST00000542238 GBP2P32456 591 aaPredicted RBP17.21■□□□□ 0.35
RTN3-211ENST00000542238 GLUD2P49448 558 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 STK3Q13188 491 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 EMC2Q15006 297 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 EPHA7Q15375 998 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 XKR9Q5GH70 373 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 CWF19L1Q69YN2 538 aaKnown RBP17.21■□□□□ 0.35
RTN3-211ENST00000542238 FRMD5Q7Z6J6 570 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 FERMT3Q86UX7 667 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 SIX5Q8N196 739 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 LXNQ9BS40 222 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 KCNJ14Q9UNX9 436 aa17.21■□□□□ 0.35
RTN3-211ENST00000542238 MTCL1Q9Y4B5 1905 aaKnown RBP17.21■□□□□ 0.35
RTN3-211ENST00000542238 STK25O00506 426 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 TEX28O15482 410 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 CCNT1O60563 726 aaKnown RBP17.2■□□□□ 0.34
RTN3-211ENST00000542238 CDKL5O76039 1030 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 RFX1P22670 979 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 MXD4Q14582 209 aaPredicted RBP17.2■□□□□ 0.34
RTN3-211ENST00000542238 NOTUMQ6P988 496 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 COLGALT2Q8IYK4 626 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 SMG8Q8ND04 991 aaKnown RBP17.2■□□□□ 0.34
RTN3-211ENST00000542238 CCDC51Q96ER9 411 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 MTRQ99707 1265 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 LARP6Q9BRS8 491 aaKnown RBP17.2■□□□□ 0.34
RTN3-211ENST00000542238 PHF20Q9BVI0 1012 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 ZSWIM4Q9H7M6 989 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 WRAP73Q9P2S5 460 aaPredicted RBP17.2■□□□□ 0.34
RTN3-211ENST00000542238 IPPQ9Y573 584 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 MYO15AQ9UKN7 3530 aa17.2■□□□□ 0.34
RTN3-211ENST00000542238 ARL5CA6NH57 179 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 INPPL1O15357 1258 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 EPB41L2O43491 1005 aaKnown RBP17.19■□□□□ 0.34
RTN3-211ENST00000542238 PI15O43692 258 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 BAG4O95429 457 aaKnown RBP17.19■□□□□ 0.34
RTN3-211ENST00000542238 NPR3P17342 541 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 TFDP1Q14186 410 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 NCAPH2Q6IBW4 605 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 TAS1R1Q7RTX1 841 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 CCDC105Q8IYK2 499 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 HACE1Q8IYU2 909 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 GAD1Q99259 594 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 COLEC11Q9BWP8 271 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 RHOBTB2Q9BYZ6 727 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 TRIM6Q9C030 488 aaPredicted RBP17.19■□□□□ 0.34
RTN3-211ENST00000542238 WDR6Q9NNW5 1121 aaKnown RBP17.19■□□□□ 0.34
RTN3-211ENST00000542238 MARCH5Q9NX47 278 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 RGL1Q9NZL6 768 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 CLUHO75153 1309 aa17.19■□□□□ 0.34
RTN3-211ENST00000542238 INO80B-WBP1J3KQ70 363 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 MLH1P40692 756 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 CTTNQ14247 550 aaKnown RBP17.18■□□□□ 0.34
RTN3-211ENST00000542238 ANGPT1Q15389 498 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 KIAA0319Q5VV43 1072 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 PIK3AP1Q6ZUJ8 805 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 TPH2Q8IWU9 490 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 SLFN12Q8IYM2 578 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 DTWD2Q8NBA8 298 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 HDAC7Q8WUI4 952 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 SMG7Q92540 1137 aaKnown RBP17.18■□□□□ 0.34
RTN3-211ENST00000542238 HAS1Q92839 578 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 NXPE3Q969Y0 559 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 DYDC2Q96IM9 177 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 EIF2AQ9BY44 585 aaKnown RBP17.18■□□□□ 0.34
RTN3-211ENST00000542238 TM6SF1Q9BZW5 370 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 CSRNP2Q9H175 543 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 PLEKHA4Q9H4M7 779 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 PIDD1Q9HB75 910 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 RXFP1Q9HBX9 757 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 WNT16Q9UBV4 365 aa17.18■□□□□ 0.34
RTN3-211ENST00000542238 TSPAN1O60635 241 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 C1RP00736 705 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 CFHP08603 1231 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 SCNN1GP51170 649 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 PTENP60484 403 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 DSG1Q02413 1049 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 CYP4A11Q02928 519 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 DSC1Q08554 894 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 RNF168Q8IYW5 571 aaPredicted RBP17.17■□□□□ 0.34
RTN3-211ENST00000542238 ADSSL1Q8N142 457 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 CPB2Q96IY4 423 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 APOL6Q9BWW8 343 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 RNF39Q9H2S5 420 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.17■□□□□ 0.34
RTN3-211ENST00000542238 PDRG1Q9NUG6 133 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 EPS15L1Q9UBC2 864 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 GIT1Q9Y2X7 761 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 HES2Q9Y543 173 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 GTF3C3Q9Y5Q9 886 aa17.17■□□□□ 0.34
RTN3-211ENST00000542238 DOCK8Q8NF50 2099 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms