RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KCND2Q9NZV8 630 aa15.68■□□□□ 0.1
USP28-209ENST00000540925 FBXO2Q9UK22 296 aaPredicted RBP15.68■□□□□ 0.1
USP28-209ENST00000540925 HES2Q9Y543 173 aa15.68■□□□□ 0.1
USP28-209ENST00000540925 ARL5CA6NH57 179 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 DDHD2O94830 711 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 PRKCBP05771 671 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 PLA2G4BP0C869 781 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 DSC1Q08554 894 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 ADAM15Q13444 863 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 MAPK6Q16659 721 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 NT5DC1Q5TFE4 455 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 PDE12Q6L8Q7 609 aaKnown RBP15.67■□□□□ 0.1
USP28-209ENST00000540925 CDR2LQ86X02 465 aaPredicted RBP15.67■□□□□ 0.1
USP28-209ENST00000540925 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.67■□□□□ 0.1
USP28-209ENST00000540925 BCL7CQ8WUZ0 217 aaPredicted RBP15.67■□□□□ 0.1
USP28-209ENST00000540925 KCNN1Q92952 543 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 IFT74Q96LB3 600 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 DRC1Q96MC2 740 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 CCSER1Q9C0I3 900 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 KANSL3Q9P2N6 904 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 DNAJB4Q9UDY4 337 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 INPP5FQ9Y2H2 1132 aa15.67■□□□□ 0.1
USP28-209ENST00000540925 SRPRBQ9Y5M8 271 aaKnown RBP15.67■□□□□ 0.1
USP28-209ENST00000540925 CARNS1A5YM72 827 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 ZC3H11AO75152 810 aaKnown RBP eCLIP15.66■□□□□ 0.17e-6■■■■■ 33.7
USP28-209ENST00000540925 TBX10O75333 385 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 NPTXRO95502 500 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 GLP2RO95838 553 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 EFEMP2O95967 443 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 ITGA4P13612 1032 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 KCNA5P22460 613 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 UBA7P41226 1012 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 SLC11A1P49279 550 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 NASPP49321 788 aaPredicted RBP15.66■□□□□ 0.1
USP28-209ENST00000540925 ALDH7A1P49419 539 aaKnown RBP15.66■□□□□ 0.1
USP28-209ENST00000540925 DLX2Q07687 328 aaPredicted RBP15.66■□□□□ 0.1
USP28-209ENST00000540925 PRPF4BQ13523 1007 aaKnown RBP15.66■□□□□ 0.1
USP28-209ENST00000540925 KCNC3Q14003 757 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 USP49Q70CQ1 688 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 HSCBQ8IWL3 235 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 EFHBQ8N7U6 833 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 DEPTORQ8TB45 409 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 ADAMTS19Q8TE59 1207 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 SPIRE2Q8WWL2 714 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 IGSF21Q96ID5 467 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 ZFP42Q96MM3 310 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 USP28Q96RU2 1077 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 PLIN2Q99541 437 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 VN1R3Q9BXE9 311 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 TMEM134Q9H6X4 195 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 PTPRHQ9HD43 1115 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 MIOSQ9NXC5 875 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 DAXXQ9UER7 740 aaPredicted RBP15.66■□□□□ 0.1
USP28-209ENST00000540925 USP20Q9Y2K6 914 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 GIT1Q9Y2X7 761 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 MYH15Q9Y2K3 1946 aa15.66■□□□□ 0.1
USP28-209ENST00000540925 NT5C1B-RDH14C9J2C7 533 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 N4BP3O15049 544 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 LINC01565O15544 149 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 PLCG1P19174 1290 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 MLH1P40692 756 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 PEX3P56589 373 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 SLC39A14Q15043 492 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 KARSQ15046 597 aaKnown RBP15.65■□□□□ 0.1
USP28-209ENST00000540925 ZRSR1Q15695 479 aaKnown RBP15.65■□□□□ 0.1
USP28-209ENST00000540925 EEF1DP3Q658K8 133 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 URGCPQ8TCY9 931 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 EPSTI1Q96J88 318 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 GAD1Q99259 594 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 TMEM175Q9BSA9 504 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 NGRNQ9NPE2 291 aaKnown RBP15.65■□□□□ 0.1
USP28-209ENST00000540925 PUF60Q9UHX1 559 aaKnown RBP15.65■□□□□ 0.1
USP28-209ENST00000540925 PHLPP2Q6ZVD8 1323 aa15.65■□□□□ 0.1
USP28-209ENST00000540925 TCF20Q9UGU0 1960 aaKnown RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 HIDE1A8MVS5 230 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 TNFRSF10AO00220 468 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 ABLIM1O14639 778 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CSPG5O95196 566 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 POMCP01189 267 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 PLS3P13797 630 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 AKAP5P24588 427 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 MARCKSP29966 332 aaPredicted RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 NRIP1P48552 1158 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 ZNF131P52739 623 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 KRT17Q04695 432 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 DMP1Q13316 513 aaPredicted RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 DUSP6Q16828 381 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 DDX53Q86TM3 631 aaKnown RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 COLGALT2Q8IYK4 626 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 TMEM161BQ8NDZ6 487 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 VN1R2Q8NFZ6 395 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 RAD54LQ92698 747 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CALML4Q96GE6 196 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CDK5RAP3Q96JB5 506 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 MSLNLQ96KJ4 702 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CLIC6Q96NY7 704 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 TRIM6Q9C030 488 aaPredicted RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 ZBP1Q9H171 429 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CLDND1Q9NY35 253 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 CLEC1BQ9P126 229 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms