RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CENPUQ71F23 418 aa15.04■□□□□ -0
USP3-204ENST00000540797 FAM71BQ8TC56 605 aa15.04■□□□□ -0
USP3-204ENST00000540797 PDCD6IPQ8WUM4 868 aaKnown RBP15.04■□□□□ -0
USP3-204ENST00000540797 DEPDC1BQ8WUY9 529 aa15.04■□□□□ -0
USP3-204ENST00000540797 RRAGCQ9HB90 399 aa15.04■□□□□ -0
USP3-204ENST00000540797 ZDHHC9Q9Y397 364 aa15.04■□□□□ -0
USP3-204ENST00000540797 SYNGAP1Q96PV0 1343 aa15.04■□□□□ -0
USP3-204ENST00000540797 RGL2O15211 777 aa15.04■□□□□ -0
USP3-204ENST00000540797 KIAA1755Q5JYT7 1200 aa15.04■□□□□ -0
USP3-204ENST00000540797 PYROXD1Q8WU10 500 aa15.04■□□□□ -0
USP3-204ENST00000540797 MROH8Q9H579 483 aa15.04■□□□□ -0
USP3-204ENST00000540797 CLGNO14967 610 aa15.04■□□□□ -0
USP3-204ENST00000540797 LCP1P13796 627 aa15.04■□□□□ -0
USP3-204ENST00000540797 KCTD16Q68DU8 428 aa15.04■□□□□ -0
USP3-204ENST00000540797 RNF25Q96BH1 459 aaPredicted RBP15.04■□□□□ -0
USP3-204ENST00000540797 MED4Q9NPJ6 270 aa15.04■□□□□ -0
USP3-204ENST00000540797 POLR1AO95602 1720 aaPredicted RBP15.04■□□□□ -0
USP3-204ENST00000540797 MYMKA6NI61 221 aa15.04■□□□□ -0
USP3-204ENST00000540797 RPA1P27694 616 aa15.04■□□□□ -0
USP3-204ENST00000540797 ATF7IP2Q5U623 682 aa15.04■□□□□ -0
USP3-204ENST00000540797 GLB1LQ6UWU2 654 aa15.04■□□□□ -0
USP3-204ENST00000540797 RDM1Q8NG50 284 aa15.04■□□□□ -0
USP3-204ENST00000540797 SLIT1O75093 1534 aa15.03■□□□□ -0
USP3-204ENST00000540797 TEX33O43247 280 aa15.03■□□□□ -0
USP3-204ENST00000540797 ZWINTO95229 277 aa15.03■□□□□ -0
USP3-204ENST00000540797 FSD1LQ9BXM9 530 aa15.03■□□□□ -0
USP3-204ENST00000540797 NEMP1O14524 444 aa15.03■□□□□ -0
USP3-204ENST00000540797 KRT7P08729 469 aa15.03■□□□□ -0
USP3-204ENST00000540797 SSTR3P32745 418 aaPredicted RBP15.03■□□□□ -0
USP3-204ENST00000540797 MAP1SQ66K74 1059 aaPredicted RBP15.03■□□□□ -0
USP3-204ENST00000540797 OPTNQ96CV9 577 aa15.03■□□□□ -0
USP3-204ENST00000540797 IFT43Q96FT9 208 aa15.03■□□□□ -0
USP3-204ENST00000540797 SIK2Q9H0K1 926 aa15.03■□□□□ -0
USP3-204ENST00000540797 TMEM60Q9H2L4 133 aa15.03■□□□□ -0
USP3-204ENST00000540797 ANKEF1Q9NU02 776 aa15.03■□□□□ -0
USP3-204ENST00000540797 INTS9Q9NV88 658 aaKnown RBP15.03■□□□□ -0
USP3-204ENST00000540797 PRMT7Q9NVM4 692 aaPredicted RBP15.03■□□□□ -0
USP3-204ENST00000540797 TMX2Q9Y320 296 aa15.03■□□□□ -0
USP3-204ENST00000540797 TTC26A0AVF1 554 aa15.03■□□□□ -0
USP3-204ENST00000540797 CCDC188H7C350 402 aa15.03■□□□□ -0
USP3-204ENST00000540797 SART1O43290 800 aaKnown RBP15.03■□□□□ -0
USP3-204ENST00000540797 ARID5BQ14865 1188 aa15.03■□□□□ -0
USP3-204ENST00000540797 SNRNP35Q16560 246 aaKnown RBP15.03■□□□□ -0
USP3-204ENST00000540797 GLYCTKQ8IVS8 523 aa15.03■□□□□ -0
USP3-204ENST00000540797 KIF2CQ99661 725 aa15.03■□□□□ -0
USP3-204ENST00000540797 CAPS2Q9BXY5 557 aa15.03■□□□□ -0
USP3-204ENST00000540797 ARHGAP42A6NI28 874 aa15.03■□□□□ -0
USP3-204ENST00000540797 MYBP10242 640 aa15.03■□□□□ -0
USP3-204ENST00000540797 ACTR2P61160 394 aa15.03■□□□□ -0
USP3-204ENST00000540797 KRT33BQ14525 404 aa15.03■□□□□ -0
USP3-204ENST00000540797 FAM83AQ86UY5 434 aa15.03■□□□□ -0
USP3-204ENST00000540797 DHX38Q92620 1227 aaKnown RBP15.03■□□□□ -0
USP3-204ENST00000540797 EXOC1LA0A1B0GW35 172 aa15.03■□□□□ -0
USP3-204ENST00000540797 SPOPLQ6IQ16 392 aa15.03■□□□□ -0
USP3-204ENST00000540797 TRIM42Q8IWZ5 723 aa15.03■□□□□ -0
USP3-204ENST00000540797 SPON2Q9BUD6 331 aa15.03■□□□□ -0
USP3-204ENST00000540797 ABCF3Q9NUQ8 709 aa15.03■□□□□ -0
USP3-204ENST00000540797 SLC38A7Q9NVC3 462 aa15.03■□□□□ -0
USP3-204ENST00000540797 MOSPD1Q9UJG1 213 aa15.03■□□□□ -0
USP3-204ENST00000540797 MROH2AA6NES4 1674 aa15.02■□□□□ -0
USP3-204ENST00000540797 C17orf102A2RUQ5 167 aa15.02■□□□□ -0
USP3-204ENST00000540797 CYP26A1O43174 497 aa15.02■□□□□ -0
USP3-204ENST00000540797 CD4P01730 458 aa15.02■□□□□ -0
USP3-204ENST00000540797 FDPSP14324 419 aaKnown RBP15.02■□□□□ -0
USP3-204ENST00000540797 PAMP19021 973 aa15.02■□□□□ -0
USP3-204ENST00000540797 VCAM1P19320 739 aa15.02■□□□□ -0
USP3-204ENST00000540797 NPEPPSP55786 919 aa15.02■□□□□ -0
USP3-204ENST00000540797 CDK17Q00537 523 aa15.02■□□□□ -0
USP3-204ENST00000540797 JADE1Q6IE81 842 aa15.02■□□□□ -0
USP3-204ENST00000540797 C10orf67Q8IYJ2 551 aa15.02■□□□□ -0
USP3-204ENST00000540797 FMO2Q99518 471 aa15.02■□□□□ -0
USP3-204ENST00000540797 NUF2Q9BZD4 464 aa15.02■□□□□ -0
USP3-204ENST00000540797 VPS33BQ9H267 617 aa15.02■□□□□ -0
USP3-204ENST00000540797 IL25Q9H293 177 aa15.02■□□□□ -0
USP3-204ENST00000540797 VCXQ9H320 206 aa15.02■□□□□ -0
USP3-204ENST00000540797 PPP1R9AQ9ULJ8 1098 aa15.02■□□□□ -0
USP3-204ENST00000540797 PGK2P07205 417 aa15.02■□□□□ -0
USP3-204ENST00000540797 IFNAR2P48551 515 aa15.02■□□□□ -0
USP3-204ENST00000540797 FXR2P51116 673 aaKnown RBP eCLIP15.02■□□□□ -0
USP3-204ENST00000540797 NCOA4Q13772 614 aa15.02■□□□□ -0
USP3-204ENST00000540797 CC2D1AQ6P1N0 951 aaPredicted RBP15.02■□□□□ -0
USP3-204ENST00000540797 DHX35Q9H5Z1 703 aaKnown RBP15.02■□□□□ -0
USP3-204ENST00000540797 IRAK4Q9NWZ3 460 aa15.02■□□□□ -0
USP3-204ENST00000540797 A0A1W2PQC6 194 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 CACNB2Q08289 660 aaPredicted RBP15.02□□□□□ -0.01
USP3-204ENST00000540797 DDR1Q08345 913 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 TTC31Q49AM3 519 aaPredicted RBP15.02□□□□□ -0.01
USP3-204ENST00000540797 YAF2Q8IY57 180 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 DNAJC17Q9NVM6 304 aaKnown RBP15.02□□□□□ -0.01
USP3-204ENST00000540797 TBK1Q9UHD2 729 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 HPS5Q9UPZ3 1129 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 FARP1Q9Y4F1 1045 aaPredicted RBP15.02□□□□□ -0.01
USP3-204ENST00000540797 DEPDC5O75140 1603 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 ATXN8OSP0DMR3 200 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 DPYDQ12882 1025 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 SGSM1Q2NKQ1 1148 aa15.02□□□□□ -0.01
USP3-204ENST00000540797 RHOBTB3O94955 611 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 IL18RAPO95256 599 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 SLCO1A2P46721 670 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 SLC7A5Q01650 507 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms