RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HSD17B3P37058 310 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 SF3B2Q13435 895 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 UAP1Q16222 522 aaPredicted RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 ODF2Q5BJF6 829 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 DALRD3Q5D0E6 543 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 SLC39A4Q6P5W5 647 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 PRUNE1Q86TP1 453 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 TRPM4Q8TD43 1214 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 PPANQ9NQ55 473 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 TSKSQ9UJT2 592 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 COMTP21964 271 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 ECHS1P30084 290 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 CTNNA1P35221 906 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 SLCO1A2P46721 670 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 O00370 1275 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 WDR46O15213 610 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 SSR1P43307 286 aaKnown RBP18.25■□□□□ 0.51
USP28-208ENST00000540438 TMEM132BQ14DG7 1078 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 ZNF394Q53GI3 561 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 PCNX4Q63HM2 1172 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 EMBQ6PCB8 327 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 RFFLQ8WZ73 363 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 KLHL11Q9NVR0 708 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 TBX20Q9UMR3 447 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 MYO1CO00159 1063 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 FAM83AQ86UY5 434 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 SCFD2Q8WU76 684 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 TAF1DQ9H5J8 278 aaPredicted RBP18.24■□□□□ 0.51
USP28-208ENST00000540438 TTLL13PA6NNM8 815 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 CHRNB2P17787 502 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 LMNB1P20700 586 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 TMEM161BQ8NDZ6 487 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 AGBL3Q8NEM8 1001 aa18.24■□□□□ 0.51
USP28-208ENST00000540438 SPOPO43791 374 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 CSDE1O75534 798 aaKnown RBP18.23■□□□□ 0.51
USP28-208ENST00000540438 BCRP11274 1271 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 TNNI1P19237 187 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 OSTNP61366 133 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PSMC5P62195 406 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 DMP1Q13316 513 aaPredicted RBP18.23■□□□□ 0.51
USP28-208ENST00000540438 BIRC3Q13489 604 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 WDR78Q5VTH9 848 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 FOXR2Q6PJQ5 311 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 ZNF572Q7Z3I7 529 aaPredicted RBP18.23■□□□□ 0.51
USP28-208ENST00000540438 ATG4AQ8WYN0 398 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 ZNF653Q96CK0 615 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 HEMGNQ9BXL5 484 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 LRRIQ4A6NIV6 560 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 DDX3YO15523 660 aaKnown RBP18.23■□□□□ 0.51
USP28-208ENST00000540438 DRP2Q13474 957 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 MOB2Q70IA6 237 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 INTS8Q75QN2 995 aaKnown RBP18.23■□□□□ 0.51
USP28-208ENST00000540438 MCF2L2Q86YR7 1114 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 IQCKQ8N0W5 287 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 C1orf54Q8WWF1 131 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PWWP2AQ96N64 755 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PAGR1Q9BTK6 254 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 SEL1LQ9UBV2 794 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 STXBP5LQ9Y2K9 1186 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 DOCK5Q9H7D0 1870 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 WDR64B1ANS9 1081 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PYGMP11217 842 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 SV2AQ7L0J3 742 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 MDM1Q8TC05 714 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 EPS8L1Q8TE68 723 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PPP1R13LQ8WUF5 828 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 PICK1Q9NRD5 415 aa18.23■□□□□ 0.51
USP28-208ENST00000540438 SHBGP04278 402 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 ADCY1Q08828 1119 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 HES6Q96HZ4 224 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 NUP85Q9BW27 656 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 STRA6Q9BX79 667 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 USTQ9Y2C2 406 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 ATP2C2O75185 946 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 GJB1P08034 283 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 ZBTB48P10074 688 aaPredicted RBP18.22■□□□□ 0.51
USP28-208ENST00000540438 PRKCEQ02156 737 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 CETN1Q12798 172 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 IFI16Q16666 785 aaKnown RBP18.22■□□□□ 0.51
USP28-208ENST00000540438 TMEM63BQ5T3F8 832 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 ZBTB33Q86T24 672 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 TRIM50Q86XT4 487 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 KIAA1683Q9H0B3 1180 aa18.22■□□□□ 0.51
USP28-208ENST00000540438 VGLL3A8MV65 326 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 DHX37Q8IY37 1157 aaKnown RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 ACSF2Q96CM8 615 aaPredicted RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 A1CFQ9NQ94 594 aaKnown RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 GGA3Q9NZ52 723 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 TMEM59LQ9UK28 342 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 PCDHA10Q9Y5I2 948 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 ZNF541Q9H0D2 1346 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 TBC1D12O60347 775 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 TMEM253P0C7T8 217 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 BACE1P56817 501 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 TRAF1Q13077 416 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 ZFYVE27Q5T4F4 411 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 TAB3Q8N5C8 712 aaPredicted RBP18.21■□□□□ 0.51
USP28-208ENST00000540438 PARD3BQ8TEW8 1205 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 LMBR1Q8WVP7 490 aa18.21■□□□□ 0.51
USP28-208ENST00000540438 MAGOHBQ96A72 148 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms