RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SMC1AQ14683 1233 aaKnown RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 SMAD2Q15796 467 aaKnown RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 MAPK6Q16659 721 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 LONRF3Q496Y0 759 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 PLPP4Q5VZY2 271 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 TMC7Q7Z402 723 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 DDX53Q86TM3 631 aaKnown RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 SMRP1Q8NCR6 262 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 DEPTORQ8TB45 409 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 BSNDQ8WZ55 320 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 INTS4Q96HW7 963 aaKnown RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 IGSF21Q96ID5 467 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 AK8Q96MA6 479 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 MMTAG2Q9BU76 263 aaKnown RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 TIPINQ9BVW5 301 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 CCDC113Q9H0I3 377 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 NT5C3AQ9H0P0 336 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 PHLPP2Q6ZVD8 1323 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 PLXNA4Q9HCM2 1894 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 ARL5CA6NH57 179 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 PP2D1A8MPX8 630 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 ACKR2O00590 384 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 N4BP3O15049 544 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 MBTPS2O43462 519 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 GLP2RO95838 553 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 PRKCBP05771 671 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 SLC11A1P49279 550 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 GIT2Q14161 759 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 TMEM184AQ6ZMB5 413 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 RBM23Q86U06 439 aaKnown RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 TMEM173Q86WV6 379 aaPredicted RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 MRPL43Q8N983 215 aaKnown RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 DRC1Q96MC2 740 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 FAM193BQ96PV7 902 aaPredicted RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 POP1Q99575 1024 aaKnown RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 ZBP1Q9H171 429 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 NXF3Q9H4D5 531 aaKnown RBP12.77□□□□□ -0.37
RTN3-209ENST00000538995 C17orf75Q9HAS0 396 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 CLEC1BQ9P126 229 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 IRAK3Q9Y616 596 aa12.77□□□□□ -0.37
RTN3-209ENST00000538995 VWA3AA6NCI4 1184 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 C2orf71A6NGG8 1288 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 NT5C1B-RDH14C9J2C7 533 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 E9PMD0 336 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 NPTXRO95502 500 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 CTSAP10619 480 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 GUCY2CP25092 1073 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 CDC25AP30304 524 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 MLH1P40692 756 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 ZP2Q05996 745 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 DSC1Q08554 894 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 DMP1Q13316 513 aaPredicted RBP12.76□□□□□ -0.37
RTN3-209ENST00000538995 PRPF4BQ13523 1007 aaKnown RBP12.76□□□□□ -0.37
RTN3-209ENST00000538995 KCNC3Q14003 757 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 ZNF280BQ86YH2 543 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 ADHFE1Q8IWW8 467 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 GJD3Q8N144 294 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 VPS52Q8N1B4 723 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 GAD1Q99259 594 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 ADPGKQ9BRR6 497 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 GBP3Q9H0R5 595 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 PDZD7Q9H5P4 517 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 KCND2Q9NZV8 630 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 DNAJB4Q9UDY4 337 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 BARX2Q9UMQ3 279 aaPredicted RBP12.76□□□□□ -0.37
RTN3-209ENST00000538995 HES2Q9Y543 173 aa12.76□□□□□ -0.37
RTN3-209ENST00000538995 VPS37CA5D8V6 355 aaPredicted RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 HIDE1A8MVS5 230 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 K7ELQ4 463 aaPredicted RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 PER2O15055 1255 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 B4GALT3O60512 393 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 NR1I2O75469 434 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 DDHD2O94830 711 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 POMCP01189 267 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 ALDH2P05091 517 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 AFF1P51825 1210 aaKnown RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 GRIK3Q13003 919 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 CLUL1Q15846 466 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 DCAF4L1Q3SXM0 396 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 TMEM119Q4V9L6 283 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 RINT1Q6NUQ1 792 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 C1orf186Q6ZWK4 172 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 KCNK18Q7Z418 384 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 APBB1IPQ7Z5R6 666 aaPredicted RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 COLGALT2Q8IYK4 626 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 VN1R2Q8NFZ6 395 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 BCL7CQ8WUZ0 217 aaPredicted RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 CDK5RAP3Q96JB5 506 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 RUSC1Q9BVN2 902 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 TCF20Q9UGU0 1960 aaKnown RBP12.75□□□□□ -0.37
RTN3-209ENST00000538995 KCNG1Q9UIX4 513 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 FAN1Q9Y2M0 1017 aa12.75□□□□□ -0.37
RTN3-209ENST00000538995 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.74□□□□□ -0.37
RTN3-209ENST00000538995 C19orf67A6NJJ6 358 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 HIP1RO75146 1068 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 HOXB8P17481 243 aaPredicted RBP12.74□□□□□ -0.37
RTN3-209ENST00000538995 LONP1P36776 959 aaKnown RBP12.74□□□□□ -0.37
RTN3-209ENST00000538995 NPTX2P47972 431 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 SCNN1GP51170 649 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 MAPK7Q13164 816 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms