RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SUGCTQ9HAC7 445 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 RGL1Q9NZL6 768 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 MAGEC2Q9UBF1 373 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-208ENST00000537004 SEPT9Q9UHD8 586 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-208ENST00000537004 TRPV2Q9Y5S1 764 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 EPOPA6NHQ4 379 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 AKR1B15C9JRZ8 316 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-208ENST00000537004 CYP4A11Q02928 519 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 TAP1Q03518 808 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 MTERF2Q49AM1 385 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 CENPPQ6IPU0 288 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 EFCAB12Q6NXP0 572 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 TSHZ1Q6ZSZ6 1077 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 FAM167AQ96KS9 214 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 NRBP2Q9NSY0 501 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 PANK4Q9NVE7 773 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 MTUS1Q9ULD2 1270 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 COL1A2P08123 1366 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 M0QZ92 97 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 ZBTB39O15060 712 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 ARHGAP6O43182 974 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 STX10O60499 249 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 CYP11B2P19099 503 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 SLC12A3P55017 1021 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 TARBP2Q15633 366 aaKnown RBP13.1□□□□□ -0.31
CLIP1-208ENST00000537004 PTPN14Q15678 1187 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 CEP135Q66GS9 1140 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 ANO5Q75V66 913 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 FAM114A1Q8IWE2 563 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 RDM1Q8NG50 284 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 LINC01599Q8WXQ3 324 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 EEF2KMTQ96G04 330 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 PPP1R13BQ96KQ4 1090 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 PANX2Q96RD6 677 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 OSMRQ99650 979 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 POLR3CQ9BUI4 534 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-208ENST00000537004 PADI3Q9ULW8 664 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 DNM3Q9UQ16 869 aa13.1□□□□□ -0.31
CLIP1-208ENST00000537004 LGALS16A8MUM7 142 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 EFCAB14O75071 495 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 AMHP03971 560 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 IBSPP21815 317 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 NPEPPSP55786 919 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 UBXN1Q04323 297 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 NFX1Q12986 1120 aaKnown RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 CTTNQ14247 550 aaKnown RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 XKR3Q5GH77 459 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 RTN4RL1Q86UN2 441 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 CCDC65Q8IXS2 484 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 NME8Q8N427 588 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 CPLX3Q8WVH0 158 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 ARNTL2Q8WYA1 636 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 TOP1MTQ969P6 601 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 CEP89Q96ST8 783 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 RAD9AQ99638 391 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 EIF2AK1Q9BQI3 630 aaKnown RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 AKT3Q9Y243 479 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 NOC2LQ9Y3T9 749 aaKnown RBP13.09□□□□□ -0.31
CLIP1-208ENST00000537004 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.09□□□□□ -0.315e-7■■■□□ 17.8
CLIP1-208ENST00000537004 GBF1Q92538 1859 aa13.09□□□□□ -0.31
CLIP1-208ENST00000537004 UQCRHLA0A096LP55 91 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 NPHP3-ACAD11A0A0J9YXS1 232 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 ENPP3O14638 875 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 GPR32O75388 356 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 GYPCP04921 128 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 UQCRHP07919 91 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 TPM1P09493 284 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 CASP14P31944 242 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 QARSP47897 775 aaKnown RBP13.08□□□□□ -0.31
CLIP1-208ENST00000537004 PSMC5P62195 406 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 TBC1D8BQ0IIM8 1120 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 ARSHQ5FYA8 562 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 FAM26FQ5R3K3 315 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 LINC01465Q8N7H1 131 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 GLIS3Q8NEA6 775 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 APBB2Q92870 758 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 DYDC2Q96IM9 177 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 CNOT6LQ96LI5 555 aaKnown RBP13.08□□□□□ -0.31
CLIP1-208ENST00000537004 LXNQ9BS40 222 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 TUBGCP2Q9BSJ2 902 aa13.08□□□□□ -0.31
CLIP1-208ENST00000537004 PTPRSQ13332 1948 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 CCP110O43303 1012 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 MFAP3LO75121 409 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 CSDE1O75534 798 aaKnown RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 KRT18P05783 430 aaKnown RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 IGFBP4P22692 258 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 NLRP11P59045 1033 aaKnown RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 CACNB1Q02641 598 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 LRRC63Q05C16 580 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 RAD51AP2Q09MP3 1159 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 CNGA4Q8IV77 575 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 SYT2Q8N9I0 419 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 MYRIPQ8NFW9 859 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 MAFAQ8NHW3 353 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 PPM1EQ8WY54 764 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 MAP7D2Q96T17 732 aa13.08□□□□□ -0.32
CLIP1-208ENST00000537004 NIFKQ9BYG3 293 aaKnown RBP13.08□□□□□ -0.32
CLIP1-208ENST00000537004 SIP14410 1827 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 MYH9P35579 1960 aaKnown RBP13.07□□□□□ -0.32
CLIP1-208ENST00000537004 FRMD3A2A2Y4 597 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms