RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 C8orf76Q96K31 380 aa18.69■□□□□ 0.58
CPSF1-207ENST00000531727 RIPOR3Q96MK2 946 aa18.69■□□□□ 0.58
CPSF1-207ENST00000531727 LLPHQ9BRT6 129 aaKnown RBP18.69■□□□□ 0.58
CPSF1-207ENST00000531727 TECTAO75443 2155 aa18.69■□□□□ 0.58
CPSF1-207ENST00000531727 A0A087WWV3 80 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 ARL5CA6NH57 179 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 USO1O60763 962 aaKnown RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 ARF4P18085 180 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 SP100P23497 879 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 SIGLEC14Q08ET2 396 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 ORC2Q13416 577 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 RARS2Q5T160 578 aaKnown RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 PPFIBP1Q86W92 1011 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 CATSPER3Q86XQ3 398 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 COLGALT2Q8IYK4 626 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 C12orf76Q8N812 135 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-207ENST00000531727 PBXIP1Q96AQ6 731 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 GAD1Q99259 594 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 RNF39Q9H2S5 420 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 HES2Q9Y543 173 aa18.68■□□□□ 0.58
CPSF1-207ENST00000531727 TDRD15B5MCY1 1934 aaKnown RBP18.67■□□□□ 0.58
CPSF1-207ENST00000531727 MLH1P40692 756 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 KIAA1841Q6NSI8 718 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 HACE1Q8IYU2 909 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 MCPH1Q8NEM0 835 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 FBXL18Q96ME1 805 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 KLHL5Q96PQ7 755 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 POLR3CQ9BUI4 534 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-207ENST00000531727 EMILIN2Q9BXX0 1053 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 TRIM6Q9C030 488 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-207ENST00000531727 FOXP1Q9H334 677 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-207ENST00000531727 TSHZ2Q9NRE2 1034 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 DBR1Q9UK59 544 aaKnown RBP18.67■□□□□ 0.58
CPSF1-207ENST00000531727 GIT1Q9Y2X7 761 aa18.67■□□□□ 0.58
CPSF1-207ENST00000531727 B4GALT5O43286 388 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 LILRB3O75022 631 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 MED24O75448 989 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 SOD2P04179 222 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 SSBP05455 408 aaKnown RBP eCLIP18.66■□□□□ 0.58
CPSF1-207ENST00000531727 WEE2P0C1S8 567 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 OR1G1P47890 313 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 SCNN1GP51170 649 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 DSC1Q08554 894 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 KANK3Q6NY19 840 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 SLC27A1Q6PCB7 646 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 MAEAQ7L5Y9 396 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 CABP7Q86V35 215 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 ZFP42Q96MM3 310 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 NACC1Q96RE7 527 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 HERC2P3Q9BVR0 1158 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 APOL6Q9BWW8 343 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 NXF3Q9H4D5 531 aaKnown RBP18.66■□□□□ 0.58
CPSF1-207ENST00000531727 GPRC5CQ9NQ84 441 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 MRPL17Q9NRX2 175 aaKnown RBP18.66■□□□□ 0.58
CPSF1-207ENST00000531727 MARCH5Q9NX47 278 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 MIOSQ9NXC5 875 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 PRG3Q9Y2Y8 225 aaPredicted RBP18.66■□□□□ 0.58
CPSF1-207ENST00000531727 DENND4AQ7Z401 1863 aa18.66■□□□□ 0.58
CPSF1-207ENST00000531727 LRRIQ4A6NIV6 560 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 C2CD4DB7Z1M9 353 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 CNPP09543 421 aaKnown RBP18.65■□□□□ 0.58
CPSF1-207ENST00000531727 OR52Z1P0C646 297 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 KLRC2P26717 231 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 RPA1P27694 616 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 CLCN4P51793 760 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 HMGN5P82970 282 aaKnown RBP18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ZNF174Q15697 407 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ATAT1Q5SQI0 421 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ZBTB33Q86T24 672 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 FBXO18Q8NFZ0 1043 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ERMNQ8TAM6 284 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ASIC4Q96FT7 647 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ZSCAN31Q96LW9 406 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-207ENST00000531727 SFXN1Q9H9B4 322 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 PRMT7Q9NVM4 692 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ZMYM2Q9UBW7 1377 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 ZNF318Q5VUA4 2279 aa18.65■□□□□ 0.58
CPSF1-207ENST00000531727 WDFY4Q6ZS81 3184 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 A0A1B0GUA9 196 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 NR1I2O75469 434 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 NPTXRO95502 500 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 EFEMP2O95967 443 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 URODP06132 367 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 NHLH1Q02575 133 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 CDCA2Q69YH5 1023 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-207ENST00000531727 POTEGQ6S5H5 508 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 PPP4R3CPQ6ZMV5 832 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 CDR2LQ86X02 465 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-207ENST00000531727 SUGP1Q8IWZ8 645 aaKnown RBP18.64■□□□□ 0.57
CPSF1-207ENST00000531727 RNF168Q8IYW5 571 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-207ENST00000531727 FBXL6Q8N531 539 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 PRIMPOLQ96LW4 560 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 RPS6KC1Q96S38 1066 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 SH2B1Q9NRF2 756 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-207ENST00000531727 SSX2IPQ9Y2D8 614 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 KMT2EQ8IZD2 1858 aa18.64■□□□□ 0.57
CPSF1-207ENST00000531727 C2CD2LO14523 706 aa18.63■□□□□ 0.57
CPSF1-207ENST00000531727 AKAP5P24588 427 aa18.63■□□□□ 0.57
CPSF1-207ENST00000531727 RBM25P49756 843 aaKnown RBP18.63■□□□□ 0.57
CPSF1-207ENST00000531727 FAM187BQ17R55 369 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms