RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 HES2Q9Y543 173 aa14.73□□□□□ -0.05
VPS28-211ENST00000530790 NCOR1O75376 2440 aa14.73□□□□□ -0.05
VPS28-211ENST00000530790 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 PP2D1A8MPX8 630 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 NPTXRO95502 500 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 EYA4O95677 639 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 GALTP07902 379 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 RBM10P98175 930 aaKnown RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 ATP2C1P98194 919 aaPredicted RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 ECM1Q16610 540 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 LARP1BQ659C4 914 aaKnown RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 LLGL2Q6P1M3 1020 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 DDX53Q86TM3 631 aaKnown RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 ZNF280BQ86YH2 543 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 VN1R2Q8NFZ6 395 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 BCL7CQ8WUZ0 217 aaPredicted RBP14.72□□□□□ -0.05
VPS28-211ENST00000530790 BSNDQ8WZ55 320 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 KIFAP3Q92845 792 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 IFT74Q96LB3 600 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 TMEM175Q9BSA9 504 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 C1QTNF1Q9BXJ1 281 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 ZBP1Q9H171 429 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 STK39Q9UEW8 545 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 ZMYM2Q9UBW7 1377 aa14.72□□□□□ -0.05
VPS28-211ENST00000530790 A0A1B0GUA9 196 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 C2orf71A6NGG8 1288 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 ARL5CA6NH57 179 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 N4BP3O15049 544 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 INPPL1O15357 1258 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 B4GALT3O60512 393 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 PRKCBP05771 671 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 AFF1P51825 1210 aaKnown RBP14.71□□□□□ -0.05
VPS28-211ENST00000530790 PRPF4BQ13523 1007 aaKnown RBP14.71□□□□□ -0.05
VPS28-211ENST00000530790 IL17AQ16552 155 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 MAPK6Q16659 721 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 FAM187BQ17R55 369 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 CDR2LQ86X02 465 aaPredicted RBP14.71□□□□□ -0.05
VPS28-211ENST00000530790 MRPL43Q8N983 215 aaKnown RBP14.71□□□□□ -0.05
VPS28-211ENST00000530790 TMEM87AQ8NBN3 555 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 GAD1Q99259 594 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 RNF39Q9H2S5 420 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 DNM3Q9UQ16 869 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 GIT1Q9Y2X7 761 aa14.71□□□□□ -0.05
VPS28-211ENST00000530790 USP15Q9Y4E8 981 aaPredicted RBP14.71□□□□□ -0.05
VPS28-211ENST00000530790 VWA3AA6NCI4 1184 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 E9PMD0 336 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 DDHD2O94830 711 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 CTSAP10619 480 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 LIG1P18858 919 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 CDC25AP30304 524 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 SCNN1GP51170 649 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 EFNA5P52803 228 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 GIT2Q14161 759 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 ZRSR1Q15695 479 aaKnown RBP14.7□□□□□ -0.06
VPS28-211ENST00000530790 TMEM184AQ6ZMB5 413 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 CASP10Q92851 521 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 KHSRPQ92945 711 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS28-211ENST00000530790 ZFP42Q96MM3 310 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 ADPGKQ9BRR6 497 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 KIFC3Q9BVG8 833 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 CCDC113Q9H0I3 377 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 FZD8Q9H461 694 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 PDZD7Q9H5P4 517 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 FAN1Q9Y2M0 1017 aa14.7□□□□□ -0.06
VPS28-211ENST00000530790 PRG3Q9Y2Y8 225 aaPredicted RBP14.7□□□□□ -0.06
VPS28-211ENST00000530790 VPS37CA5D8V6 355 aaPredicted RBP14.69□□□□□ -0.06
VPS28-211ENST00000530790 C19orf67A6NJJ6 358 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 NR1I2O75469 434 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 CXCL14O95715 111 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 ALDH2P05091 517 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 AKAP5P24588 427 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 OR1G1P47890 313 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 DMP1Q13316 513 aaPredicted RBP14.69□□□□□ -0.06
VPS28-211ENST00000530790 CUL4AQ13619 759 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 KCNC3Q14003 757 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 ARL6IP4Q66PJ3 421 aaKnown RBP14.69□□□□□ -0.06
VPS28-211ENST00000530790 ANKRD54Q6NXT1 300 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 BRAPQ7Z569 592 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 COLGALT2Q8IYK4 626 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 AUTS2Q8WXX7 1259 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 CDK5RAP3Q96JB5 506 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 DRC1Q96MC2 740 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 RPS6KC1Q96S38 1066 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 MMTAG2Q9BU76 263 aaKnown RBP14.69□□□□□ -0.06
VPS28-211ENST00000530790 NT5C3AQ9H0P0 336 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 EPHX3Q9H6B9 360 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 PARP2Q9UGN5 583 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 HCFC2Q9Y5Z7 792 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 IRAK3Q9Y616 596 aa14.69□□□□□ -0.06
VPS28-211ENST00000530790 PHLPP2Q6ZVD8 1323 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 ACKR2O00590 384 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 NRP1O14786 923 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 BMP15O95972 392 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 HOXB8P17481 243 aaPredicted RBP14.68□□□□□ -0.06
VPS28-211ENST00000530790 PDCP20941 246 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 DSC1Q08554 894 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 GRIK3Q13003 919 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 PTPN14Q15678 1187 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 TPRNQ4KMQ1 711 aa14.68□□□□□ -0.06
VPS28-211ENST00000530790 RUSC1Q9BVN2 902 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms