RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 ZNF568Q3ZCX4 644 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 LMBR1LQ6UX01 489 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 GLB1L2Q8IW92 636 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 AMOTL1Q8IY63 956 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 JADE3Q92613 823 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 LPPQ93052 612 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 SLC7A6OSQ96CW6 309 aaPredicted RBP6.35□□□□□ -1.39
CD44-230ENST00000528922 DPYSL5Q9BPU6 564 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 ANP32EQ9BTT0 268 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 MEGF9Q9H1U4 602 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 SEC61A2Q9H9S3 476 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 PPP4R1LQ9P1A2 415 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 SHROOM2Q13796 1616 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 IQGAP2Q13576 1575 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 PPM1GO15355 546 aaPredicted RBP6.34□□□□□ -1.39
CD44-230ENST00000528922 TMEM127O75204 238 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 PLATP00750 562 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 KIR2DL3P43628 341 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 NRG3P56975 720 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 RAC3P60763 192 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 ODF1Q14990 250 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 ADRM1Q16186 407 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 PLEKHG6Q3KR16 790 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 UNC5BQ8IZJ1 945 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 RPL10LQ96L21 214 aaKnown RBP6.34□□□□□ -1.39
CD44-230ENST00000528922 LRRC37BQ96QE4 947 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 UIMC1Q96RL1 719 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 LMF1Q96S06 567 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 SLC6A15Q9H2J7 730 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 JADE2Q9NQC1 790 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 ING3Q9NXR8 418 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 RTEL1Q9NZ71 1219 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 SPEF1Q9Y4P9 236 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 TEX14Q8IWB6 1497 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 RAD54L2Q9Y4B4 1467 aa6.34□□□□□ -1.39
CD44-230ENST00000528922 ADAMTSL3P82987 1691 aa6.34□□□□□ -1.4
CD44-230ENST00000528922 RIMS1Q86UR5 1692 aaKnown RBP6.34□□□□□ -1.4
CD44-230ENST00000528922 ZNF536O15090 1300 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 KRTAP4-8A0A0G2JLE6 195 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 KLHL33A6NCF5 533 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 ALDH1L1O75891 902 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 TOX4O94842 621 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 BPIFB4P59827 614 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 SAFB2Q14151 953 aaKnown RBP eCLIP6.33□□□□□ -1.4
CD44-230ENST00000528922 UBE3CQ15386 1083 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 SLFN13Q68D06 897 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 ABHD15Q6UXT9 468 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 TAS1R1Q7RTX1 841 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 LIMS2Q7Z4I7 341 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 MSL3Q8N5Y2 521 aaKnown RBP6.33□□□□□ -1.4
CD44-230ENST00000528922 ANKRD53Q8N9V6 530 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 GLB1L3Q8NCI6 653 aaPredicted RBP6.33□□□□□ -1.4
CD44-230ENST00000528922 GNRHR2Q96P88 292 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 GPHA2Q96T91 129 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 SSBP3Q9BWW4 388 aaPredicted RBP6.33□□□□□ -1.4
CD44-230ENST00000528922 SLC13A1Q9BZW2 595 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 AGO3Q9H9G7 860 aaKnown RBP6.33□□□□□ -1.4
CD44-230ENST00000528922 PUF60Q9UHX1 559 aaKnown RBP6.33□□□□□ -1.4
CD44-230ENST00000528922 SCOCQ9UIL1 159 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 OAZ3Q9UMX2 235 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 ITSN2Q9NZM3 1697 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 MADDQ8WXG6 1647 aa6.33□□□□□ -1.4
CD44-230ENST00000528922 XPOTO43592 962 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 ALDH1A2O94788 518 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 LTA4HP09960 611 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 VSIG10L2P0DP72 767 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 CR2P20023 1033 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 CTSSP25774 331 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 NEK2P51955 445 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 SLC5A3P53794 718 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 KRT85P78386 507 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 ACAP2Q15057 778 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 TTF1Q15361 905 aaPredicted RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 ANO4Q32M45 955 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 MBNL2Q5VZF2 373 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 BTNL9Q6UXG8 535 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 GPR135Q8IZ08 494 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 FATE1Q969F0 183 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 SIN3AQ96ST3 1273 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 CEP89Q96ST8 783 aa6.32□□□□□ -1.4
CD44-230ENST00000528922 RBM15Q96T37 977 aaKnown RBP eCLIP6.32□□□□□ -1.4
CD44-230ENST00000528922 ACE2Q9BYF1 805 aaPredicted RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 C12orf65Q9H3J6 166 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 C14orf93Q9H972 538 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 ROCK2O75116 1388 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 KTN1Q86UP2 1357 aaKnown RBP6.32□□□□□ -1.4
CD44-230ENST00000528922 PMS2P1A4D2B8 440 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 NPEPPSL1A6NEC2 478 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 BTBD11A6QL63 1104 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 GPR42O15529 346 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 SLC26A4O43511 780 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 CDC14BO60729 498 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 PPP3CAQ08209 521 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 DUSP8Q13202 625 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 ADGRE4PQ86SQ3 457 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 PNMA8AQ86V59 439 aaPredicted RBP6.31□□□□□ -1.4
CD44-230ENST00000528922 TAX1BP1Q86VP1 789 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 PPM1NQ8N819 430 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 RABGGTAQ92696 567 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 CHMP4CQ96CF2 233 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms