RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 INSRRP14616 1297 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 GZMKP49863 264 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 MTMR1Q13613 665 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 PTPROQ16827 1216 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 MST1LQ2TV78 715 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 SYDE2Q5VT97 1194 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 MBNL2Q5VZF2 373 aaKnown RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 APBB1IPQ7Z5R6 666 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 AMOTL1Q8IY63 956 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 THEMISQ8N1K5 641 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 CBARPQ8N350 705 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 LILRA3Q8N6C8 439 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 OR5M3Q8NGP4 307 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 SH3RF3Q8TEJ3 882 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 ZNF480Q8WV37 535 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 GREM2Q9H772 168 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 ZNF277Q9NRM2 450 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 HECAQ9UBI9 543 aaPredicted RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 LOC105371045A0A1W2PR82 267 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 ANKRD62A6NC57 917 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 HOXA3O43365 443 aaPredicted RBP6.38□□□□□ -1.39
CD44-223ENST00000526553 STC2O76061 302 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 AGXTP21549 392 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 CRHR1P34998 444 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 MRPL49Q13405 166 aaKnown RBP6.38□□□□□ -1.39
CD44-223ENST00000526553 MUM1L1Q5H9M0 696 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 FAM180AQ6UWF9 173 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 GPR156Q8NFN8 814 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 MDGA1Q8NFP4 955 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 RIN2Q8WYP3 895 aaPredicted RBP6.38□□□□□ -1.39
CD44-223ENST00000526553 PDCD2LQ9BRP1 358 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 GPRC5DQ9NZD1 345 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 GPR45Q9Y5Y3 372 aa6.38□□□□□ -1.39
CD44-223ENST00000526553 MATN3O15232 486 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 MFAP3LO75121 409 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 ITGA10O75578 1167 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 CFBP00751 764 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 OSMP13725 252 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 GNAT2P19087 354 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 TNFRSF1AP19438 455 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 IARSP41252 1262 aaKnown RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 CCT2P78371 535 aaKnown RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 MALLQ13021 153 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 DCAF17Q5H9S7 520 aaPredicted RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 METTL24Q5JXM2 366 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 RNF207Q6ZRF8 634 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 HTR3DQ70Z44 454 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 DOK3Q7L591 496 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 SPRED1Q7Z699 444 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 C1orf162Q8NEQ5 155 aaPredicted RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 ST8SIA2Q92186 375 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 CDC5LQ99459 802 aaKnown RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 RBM12Q9NTZ6 932 aaKnown RBP6.37□□□□□ -1.39
CD44-223ENST00000526553 TRHDEQ9UKU6 1024 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 ZBTB21Q9ULJ3 1066 aa6.37□□□□□ -1.39
CD44-223ENST00000526553 AKR1B10O60218 316 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 MCAMP43121 646 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 MAN2A2P49641 1150 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 RABGGTBP53611 331 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 KRT85P78386 507 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 ITKQ08881 620 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 PUM1Q14671 1186 aaKnown RBP eCLIP6.36□□□□□ -1.39
CD44-223ENST00000526553 FAM214AQ32MH5 1076 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 USP39Q53GS9 565 aaKnown RBP6.36□□□□□ -1.39
CD44-223ENST00000526553 LCE5AQ5TCM9 118 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 PDZD4Q76G19 769 aaPredicted RBP6.36□□□□□ -1.39
CD44-223ENST00000526553 GGNQ86UU5 652 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 GSPT2Q8IYD1 628 aaKnown RBP6.36□□□□□ -1.39
CD44-223ENST00000526553 ELOA2Q8IYF1 753 aaPredicted RBP6.36□□□□□ -1.39
CD44-223ENST00000526553 MTMR8Q96EF0 704 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 GPATCH3Q96I76 525 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 BCO1Q9HAY6 547 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 TRPS1Q9UHF7 1281 aa6.36□□□□□ -1.39
CD44-223ENST00000526553 KATNA1O75449 491 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 RBP3P10745 1247 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 IBSPP21815 317 aaPredicted RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 ECHS1P30084 290 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 APBA1Q02410 837 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 PPP3CAQ08209 521 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 CRHR2Q13324 411 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 FAM50AQ14320 339 aaKnown RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 RRP1BQ14684 758 aaKnown RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 C1QL3Q5VWW1 255 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 NAIF1Q69YI7 327 aaPredicted RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 Q6ZRM9 215 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 FAM83AQ86UY5 434 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 TMPRSS6Q8IU80 811 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 OR7D4Q8NG98 312 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 IL17DQ8TAD2 202 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 ATXN2LQ8WWM7 1075 aaKnown RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 HOXB13Q92826 284 aaPredicted RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 EXTL1Q92935 676 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 ADI1Q9BV57 179 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 EPC1Q9H2F5 836 aa6.35□□□□□ -1.39
CD44-223ENST00000526553 ZNF703Q9H7S9 590 aaPredicted RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 NOP58Q9Y2X3 529 aaKnown RBP6.35□□□□□ -1.39
CD44-223ENST00000526553 WASHC2CQ9Y4E1 1318 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 KLRG2A4D1S0 409 aaPredicted RBP6.34□□□□□ -1.39
CD44-223ENST00000526553 GOLGA6L6A8MZA4 724 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 GABRDO14764 452 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 270 ms