RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 DNAJC10Q8IXB1 793 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 UNC5BQ8IZJ1 945 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 ZNF276Q8N554 614 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 ATXN2LQ8WWM7 1075 aaKnown RBP2.6□□□□□ -1.99
CD44-212ENST00000524922 ST8SIA2Q92186 375 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 RTF1Q92541 710 aaKnown RBP2.6□□□□□ -1.99
CD44-212ENST00000524922 HAS1Q92839 578 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 VOPP1Q96AW1 172 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 PGBD4Q96DM1 585 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 ZNF496Q96IT1 587 aaPredicted RBP2.6□□□□□ -1.99
CD44-212ENST00000524922 TUBGCP5Q96RT8 1024 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 OSBPL2Q9H1P3 480 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 C14orf93Q9H972 538 aaKnown RBP2.6□□□□□ -1.99
CD44-212ENST00000524922 SYNPO2LQ9H987 977 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 TMEM260Q9NX78 707 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 ING3Q9NXR8 418 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 REXO2Q9Y3B8 237 aaKnown RBP2.6□□□□□ -1.99
CD44-212ENST00000524922 CHST2Q9Y4C5 530 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 FRMPD1Q5SYB0 1578 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 MADDQ8WXG6 1647 aa2.6□□□□□ -1.99
CD44-212ENST00000524922 DENND4BO75064 1496 aaPredicted RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 TCOF1Q13428 1488 aaKnown RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 FER1L4A9Z1Z3 1794 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 A0A1W2PR48 441 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 H7C1D1 291 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 LY86O95711 162 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 LMNAP02545 664 aaKnown RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 GCP02774 474 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 ITGB1P05556 798 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PTGS2P35354 604 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 CLK3P49761 638 aaKnown RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 CD69Q07108 199 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 ADCY1Q08828 1119 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 LRRC32Q14392 662 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 METRNLQ641Q3 311 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 LRRC55Q6ZSA7 311 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PHYKPLQ8IUZ5 450 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 SYT12Q8IV01 421 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 GSPT2Q8IYD1 628 aaKnown RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 MSL3Q8N5Y2 521 aaKnown RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 MB21D1Q8N884 522 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 ZG16BQ96DA0 208 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PDCD2LQ9BRP1 358 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 MS4A5Q9H3V2 200 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PRDM12Q9H4Q4 367 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PCIF1Q9H4Z3 704 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 SYBUQ9NX95 663 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 PPP1R1BQ9UD71 204 aaPredicted RBP2.59□□□□□ -1.99
CD44-212ENST00000524922 KIF21BO75037 1637 aa2.59□□□□□ -1.99
CD44-212ENST00000524922 CARMIL1Q5VZK9 1371 aa2.59□□□□□ -2
CD44-212ENST00000524922 PTPRKQ15262 1439 aa2.59□□□□□ -2
CD44-212ENST00000524922 C9orf84Q5VXU9 1444 aa2.59□□□□□ -2
CD44-212ENST00000524922 TRAPPC8Q9Y2L5 1435 aa2.59□□□□□ -2
CD44-212ENST00000524922 ZFYVE16Q7Z3T8 1539 aa2.58□□□□□ -2
CD44-212ENST00000524922 MED1Q15648 1581 aaPredicted RBP2.58□□□□□ -2
CD44-212ENST00000524922 CENPVL1A0A0U1RR11 272 aa2.58□□□□□ -2
CD44-212ENST00000524922 LCHNA4D1U4 455 aa2.58□□□□□ -2
CD44-212ENST00000524922 TMEM191CA6NGB0 347 aa2.58□□□□□ -2
CD44-212ENST00000524922 TMEM200CA6NKL6 621 aa2.58□□□□□ -2
CD44-212ENST00000524922 MARCH11A6NNE9 402 aa2.58□□□□□ -2
CD44-212ENST00000524922 ZNF891A8MT65 544 aaPredicted RBP2.58□□□□□ -2
CD44-212ENST00000524922 GOLGA6L6A8MZA4 724 aa2.58□□□□□ -2
CD44-212ENST00000524922 TRIM24O15164 1050 aa2.58□□□□□ -2
CD44-212ENST00000524922 OPA1O60313 960 aa2.58□□□□□ -2
CD44-212ENST00000524922 ALDH1A2O94788 518 aa2.58□□□□□ -2
CD44-212ENST00000524922 TYRP1P17643 537 aa2.58□□□□□ -2
CD44-212ENST00000524922 PABPC4Q13310 644 aaKnown RBP eCLIP2.58□□□□□ -2
CD44-212ENST00000524922 MRPL49Q13405 166 aaKnown RBP2.58□□□□□ -2
CD44-212ENST00000524922 COLEC12Q5KU26 742 aa2.58□□□□□ -2
CD44-212ENST00000524922 SOGA3Q5TF21 947 aa2.58□□□□□ -2
CD44-212ENST00000524922 ZNF662Q6ZS27 426 aa2.58□□□□□ -2
CD44-212ENST00000524922 DOK3Q7L591 496 aa2.58□□□□□ -2
CD44-212ENST00000524922 KIF18BQ86Y91 864 aa2.58□□□□□ -2
CD44-212ENST00000524922 EFHBQ8N7U6 833 aa2.58□□□□□ -2
CD44-212ENST00000524922 BEND2Q8NDZ0 799 aa2.58□□□□□ -2
CD44-212ENST00000524922 PMFBP1Q8TBY8 1022 aa2.58□□□□□ -2
CD44-212ENST00000524922 SH3TC2Q8TF17 1288 aa2.58□□□□□ -2
CD44-212ENST00000524922 BBC3Q96PG8 261 aaPredicted RBP2.58□□□□□ -2
CD44-212ENST00000524922 DNAJC2Q99543 621 aaKnown RBP2.58□□□□□ -2
CD44-212ENST00000524922 KCNH6Q9H252 994 aa2.58□□□□□ -2
CD44-212ENST00000524922 INTS7Q9NVH2 962 aaKnown RBP2.58□□□□□ -2
CD44-212ENST00000524922 RCAN3Q9UKA8 241 aa2.58□□□□□ -2
CD44-212ENST00000524922 PACSIN3Q9UKS6 424 aa2.58□□□□□ -2
CD44-212ENST00000524922 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.58□□□□□ -2
CD44-212ENST00000524922 MYPNQ86TC9 1320 aa2.58□□□□□ -2
CD44-212ENST00000524922 TSPOAP1O95153 1857 aa2.58□□□□□ -2
CD44-212ENST00000524922 RAPGEF2Q9Y4G8 1499 aa2.58□□□□□ -2
CD44-212ENST00000524922 GOLGA8BA8MQT2 603 aa2.57□□□□□ -2
CD44-212ENST00000524922 LEFTY2O00292 366 aa2.57□□□□□ -2
CD44-212ENST00000524922 WNT10BO00744 389 aa2.57□□□□□ -2
CD44-212ENST00000524922 LPXNO60711 386 aa2.57□□□□□ -2
CD44-212ENST00000524922 MFAP3LO75121 409 aa2.57□□□□□ -2
CD44-212ENST00000524922 IPO13O94829 963 aaKnown RBP2.57□□□□□ -2
CD44-212ENST00000524922 FSBPO95073 299 aa2.57□□□□□ -2
CD44-212ENST00000524922 ZSCAN20P17040 1043 aaPredicted RBP2.57□□□□□ -2
CD44-212ENST00000524922 HK1P19367 917 aa2.57□□□□□ -2
CD44-212ENST00000524922 BMP5P22003 454 aa2.57□□□□□ -2
CD44-212ENST00000524922 CASRP41180 1078 aa2.57□□□□□ -2
CD44-212ENST00000524922 IL12RB1P42701 662 aa2.57□□□□□ -2
CD44-212ENST00000524922 NPEPPSP55786 919 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms