RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 LARP4BQ92615 738 aaKnown RBP9.46□□□□□ -0.89
VCAN-208ENST00000512590 PLEKHA5Q9HAU0 1116 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 GBA2Q9HCG7 927 aaPredicted RBP9.46□□□□□ -0.89
VCAN-208ENST00000512590 RNF146Q9NTX7 359 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 PSMC3P17980 439 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 POLD3Q15054 466 aaPredicted RBP9.46□□□□□ -0.9
VCAN-208ENST00000512590 DDIASQ8IXT1 998 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 S100A13Q99584 98 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 NMRK2Q9NPI5 230 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 HOMER3Q9NSC5 361 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 ASNSD1Q9NWL6 643 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 ABCC5O15440 1437 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 SMIM22K7EJ46 135 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 M0QYV0 167 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 GH1P01241 217 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 POLR2FP61218 127 aaKnown RBP9.46□□□□□ -0.9
VCAN-208ENST00000512590 MTMR1Q13613 665 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 ANO1Q5XXA6 986 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 CCDC60Q8IWA6 550 aaPredicted RBP9.46□□□□□ -0.9
VCAN-208ENST00000512590 TTC17Q96AE7 1141 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 TNIP3Q96KP6 325 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 C1QTNF7Q9BXJ2 289 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 WDR41Q9HAD4 459 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 A0A1B0GW55 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 CHURC1-FNTBB4DL54 471 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 TRPA1O75762 1119 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L2P0CJ85 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L3P0CJ86 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L4P0CJ87 422 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L5P0CJ88 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L6P0CJ89 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4L7P0CJ90 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 CARSP49589 748 aaKnown RBP9.46□□□□□ -0.9
VCAN-208ENST00000512590 SNAP25P60880 206 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 CAMK1Q14012 370 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 UVSSAQ2YD98 709 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 SLC25A24Q6NUK1 477 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 HDXQ7Z353 690 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 TNS4Q8IZW8 715 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 SDR42E1Q8WUS8 393 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 MRFAP1L1Q96HT8 127 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 MEIS3Q99687 375 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 CARD6Q9BX69 1037 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DUX4Q9UBX2 424 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 SERPINB13Q9UIV8 391 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 DNAJC12Q9UKB3 198 aa9.46□□□□□ -0.9
VCAN-208ENST00000512590 NCOA1Q15788 1441 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 KIAA1107Q9UPP5 1409 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 MYMKA6NI61 221 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 MT-ND3P03897 115 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 LCP1P13796 627 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 HSD17B4P51659 736 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 EIF4A2Q14240 407 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 NUDCD3Q8IVD9 361 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 AHI1Q8N157 1196 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CMTR1Q8N1G2 835 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 PCSK9Q8NBP7 692 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 SERPINI1Q99574 410 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 GPR63Q9BZJ6 419 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 ABI3Q9P2A4 366 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 POTEFA5A3E0 1075 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 RASSF7Q02833 373 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CDC16Q13042 620 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 PTRHD1Q6GMV3 140 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 SUGP1Q8IWZ8 645 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 MOSPD2Q8NHP6 518 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 DPH5Q9H2P9 285 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 NHEJ1Q9H9Q4 299 aaPredicted RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 HS6ST1O60243 411 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 RPN2P04844 631 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CKMP06732 381 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CHRNA3P32297 505 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 SKP1P63208 163 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CNTN1Q12860 1018 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 C10orf120Q5SQS8 335 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 FAM83BQ5T0W9 1011 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 ITIH5Q86UX2 942 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 RASSF3Q86WH2 238 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 RNF135Q8IUD6 432 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 NRSN1Q8IZ57 195 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 TMEM199Q8N511 208 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 GPRC5AQ8NFJ5 357 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 ZNF556Q9HAH1 456 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 SLC38A7Q9NVC3 462 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 SPASTQ9UBP0 616 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 SNX5Q9Y5X3 404 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 THOP1P52888 689 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 NRG3P56975 720 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 DGKZQ13574 1117 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 CAPRIN2Q6IMN6 1127 aaKnown RBP9.45□□□□□ -0.9
VCAN-208ENST00000512590 DENND6AQ8IWF6 608 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 DSELQ8IZU8 1212 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 NCDNQ9UBB6 729 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 IGF1RP08069 1367 aa9.45□□□□□ -0.9
VCAN-208ENST00000512590 GOLGA8IPA6NC78 632 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 FAM107AO95990 144 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 SERPINB4P48594 390 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 KCNQ4P56696 695 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 SGO2Q562F6 1265 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 UHMK1Q8TAS1 419 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms