RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PKN2Q16513 984 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 SPDYCQ5MJ68 293 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CWF19L1Q69YN2 538 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 RINT1Q6NUQ1 792 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TOM1L2Q6ZVM7 507 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NEK8Q86SG6 692 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TRIM74Q86UV6 250 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TRIM73Q86UV7 250 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GPBP1Q86WP2 473 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CCDC117Q8IWD4 279 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 ANKRD42Q8N9B4 389 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MARCH10Q8NA82 808 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 EME1Q96AY2 570 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 FAF2Q96CS3 445 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ARL5BQ96KC2 179 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NEUROD6Q96NK8 337 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PHB2Q99623 299 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RBBP8Q99708 897 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CHCHD6Q9BRQ6 235 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PARD6BQ9BYG5 372 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RUVBL2Q9Y230 463 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 L3MBTL1Q9Y468 752 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SYNGAP1Q96PV0 1343 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PXDNLA1KZ92 1463 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PXDNQ92626 1479 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 H3BNX3 289 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TPPPO94811 219 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FSBPO95073 299 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 MFN2O95140 757 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CPP00450 1065 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 MT-ND3P03897 115 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 IFIT1P09914 478 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 CSB-PGBD3P0DP91 1061 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PLS3P13797 630 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PLCG2P16885 1265 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SLC9A1P19634 815 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TMOD1P28289 359 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KRT9P35527 623 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CCT3P49368 545 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 METAP2P50579 478 aaKnown RBP eCLIP3.78□□□□□ -1.8
USP53-205ENST00000509769 POU5F1Q01860 360 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 PRPSAP1Q14558 356 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 LBRQ14739 615 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 SNAP47Q5SQN1 464 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 AKNAD1Q5T1N1 836 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FAAH2Q6GMR7 532 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TBC1D9Q6ZT07 1266 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ARHGEF25Q86VW2 580 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SNX32Q86XE0 403 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TAGAPQ8N103 731 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TTC30BQ8N4P2 665 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CCDC33Q8N5R6 958 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PROCA1Q8NCQ7 364 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 MYCBPAPQ8TBZ2 947 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FAM149B1Q96BN6 582 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 LENG1Q96BZ8 264 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 ZNF274Q96GC6 653 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 CNDP1Q96KN2 507 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZMYND12Q9H0C1 365 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TRPV6Q9H1D0 765 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 NOD2Q9HC29 1040 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ERAP1Q9NZ08 941 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DENND2AQ9ULE3 1009 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 AFG3L2Q9Y4W6 797 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SQORQ9Y6N5 450 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SF3B1O75533 1304 aaKnown RBP eCLIP3.78□□□□□ -1.81e-8■■■■■ 103.4
USP53-205ENST00000509769 CAMTA1Q9Y6Y1 1673 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RNF103-CHMP3A0A140T963 221 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SCAMP1O15126 338 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PSTPIP1O43586 416 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SPAG6O75602 509 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 BCL10O95999 233 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZSCAN20P17040 1043 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 GRK2P25098 689 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 GNA11P29992 359 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TALDO1P37837 337 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 MDH1P40925 334 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 MNX1P50219 401 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 CYP4F2P78329 520 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CYP4F3Q08477 520 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ITGADQ13349 1161 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 NFE2L1Q14494 772 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 STAT4Q14765 748 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DDB1Q16531 1140 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CAMK1DQ8IU85 385 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RHOT2Q8IXI1 618 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 IQCF2Q8IXL9 164 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RBBP8NLQ8NC74 664 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 C19orf18Q8NEA5 215 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RSAD2Q8WXG1 361 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ACOT12Q8WYK0 555 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RHBDF1Q96CC6 855 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RMND5BQ96G75 393 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 RANBP17Q9H2T7 1088 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 ANKHQ9HCJ1 492 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CYP4F12Q9HCS2 524 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SLC40A1Q9NP59 571 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PRDM5Q9NQX1 630 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 CHRAC1Q9NRG0 131 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms