RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SKIP12755 728 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 RFC5P40937 340 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 ORC2Q13416 577 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-207ENST00000507401 DRP2Q13474 957 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 CAMK1Q14012 370 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 CTC1Q2NKJ3 1217 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 TCEAL5Q5H9L2 206 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 FAM102BQ5T8I3 360 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 KLHL23Q8NBE8 558 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 PPP2R3CQ969Q6 453 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 MTMR9Q96QG7 549 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 TMEM117Q9H0C3 514 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 DHX33Q9H6R0 707 aaKnown RBP8.93□□□□□ -0.98
SCN1A-207ENST00000507401 TTC12Q9H892 705 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-207ENST00000507401 SH2B1Q9NRF2 756 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-207ENST00000507401 MUC3AQ02505 3323 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 BRWD1Q9NSI6 2320 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 TCF20Q9UGU0 1960 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FNDC1Q4ZHG4 1894 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 A0A087WZ62 844 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 CARNS1A5YM72 827 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 TMEM150BA6NC51 233 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 TBKBP1A7MCY6 615 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 DTNBO60941 627 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 ZNF623O75123 536 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 ITGB1P05556 798 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 CDK11BP21127 795 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 KCNA5P22460 613 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 SFPQP23246 707 aaKnown RBP eCLIP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 YWHABP31946 246 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 PLCB3Q01970 1234 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 POU5F1BQ06416 359 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FOXC1Q12948 553 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 PCBP1Q15365 356 aaKnown RBP eCLIP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 CALCRLQ16602 461 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 PDE12Q6L8Q7 609 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 SRGAP1Q7Z6B7 1085 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 ECHDC2Q86YB7 292 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 RHPN2Q8IUC4 686 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FBXO18Q8NFZ0 1043 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 TCP11Q8WWU5 503 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 CEP170P1Q96L14 293 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 SCLT1Q96NL6 688 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 CASD1Q96PB1 797 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 PPP1R16BQ96T49 567 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 KIF2CQ99661 725 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FDXACB1Q9BRP7 624 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 LXNQ9BS40 222 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FOXP1Q9H334 677 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 ALG13Q9NP73 1137 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 ANKEF1Q9NU02 776 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 TYW1Q9NV66 732 aaKnown RBP8.92□□□□□ -0.98
SCN1A-207ENST00000507401 OGFRQ9NZT2 677 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 FAM50BQ9Y247 325 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 LZTS1Q9Y250 596 aa8.92□□□□□ -0.98
SCN1A-207ENST00000507401 GOLGA6L6A8MZA4 724 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 NEMFO60524 1076 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PTMAP06454 111 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PDIA4P13667 645 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 LAG3P18627 525 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 LTBRP36941 435 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 TXKP42681 527 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 GATMP50440 423 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 POLGP54098 1239 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 NPEPPSP55786 919 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 ST3GAL1Q11201 340 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 HYAL1Q12794 435 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 ADAM15Q13444 863 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 MXD4Q14582 209 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PAN2Q504Q3 1202 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 SPOUT1Q5T280 376 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 NCAPH2Q6IBW4 605 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PTCRAQ6ISU1 281 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 TPH2Q8IWU9 490 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 ABI1Q8IZP0 508 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 POF1BQ8WVV4 589 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PRPF31Q8WWY3 499 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PSPC1Q8WXF1 523 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 DYDC2Q96IM9 177 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 C8orf76Q96K31 380 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 EIF2AK1Q9BQI3 630 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 SH2D3AQ9BRG2 576 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 CWH43Q9H720 699 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 IFT122Q9HBG6 1241 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 LMBRD1Q9NUN5 540 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 RGL1Q9NZL6 768 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 WRAP73Q9P2S5 460 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 USP25Q9UHP3 1055 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 PUF60Q9UHX1 559 aaKnown RBP8.91□□□□□ -0.98
SCN1A-207ENST00000507401 COL4A3BPQ9Y5P4 624 aa8.91□□□□□ -0.98
SCN1A-207ENST00000507401 MYO7AQ13402 2215 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 FGF18O76093 207 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 FGFR1P11362 822 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 DNAJB1P25685 340 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 PHKA2P46019 1235 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 TRAPPC10P48553 1259 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 RAB27AP51159 221 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 KRT17Q04695 432 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 LAMTOR4Q0VGL1 99 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms