RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TCEAL9Q9UHQ7 104 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 TMEM59LQ9UK28 342 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 CTDP1Q9Y5B0 961 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 UBIAD1Q9Y5Z9 338 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 PLA2G6O60733 806 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 ADRB2P07550 413 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 MAP2K1Q02750 393 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 TNIP1Q15025 636 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 IFI16Q16666 785 aaKnown RBP17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 CIAPIN1Q6FI81 312 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 B4GALNT4Q76KP1 1039 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 CBWD2Q8IUF1 395 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 AGBL3Q8NEM8 1001 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 MGARPQ8TDB4 240 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 CTNNBL1Q8WYA6 563 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 ZKSCAN4Q969J2 545 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 SLC38A10Q9HBR0 1119 aa17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 TOPORSQ9NS56 1045 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-210ENST00000494566 FER1L6Q2WGJ9 1857 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 ANKRD63C9JTQ0 380 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 NBPF12Q5TAG4 269 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 DCAF12L1Q5VU92 463 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 CCDC13Q8IYE1 715 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 CABS1Q96KC9 395 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 STXBP5LQ9Y2K9 1186 aa17.83■□□□□ 0.44
CCDC88B-210ENST00000494566 CAND2O75155 1236 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 PLS3P13797 630 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 MARCKSL1P49006 195 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 CPLX4Q7Z7G2 160 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 SCFD2Q8WU76 684 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 BTBD6Q96KE9 485 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.82■□□□□ 0.448e-8■□□□□ 8.6
CCDC88B-210ENST00000494566 SYT11Q9BT88 431 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 KCND2Q9NZV8 630 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 DDX20Q9UHI6 824 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 WDR46O15213 610 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 PPP2R5AQ15172 486 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 NFIL3Q16649 462 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 PCNX4Q63HM2 1172 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 OTUD6AQ7L8S5 288 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 WHAMMQ8TF30 809 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 RAPGEF5Q92565 580 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 ZBED3Q96IU2 234 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 ACCSQ96QU6 501 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 ISCUQ9H1K1 167 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 GJA3Q9Y6H8 435 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 ZBTB7AO95365 584 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 SGPL1O95470 568 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 LMNB1P20700 586 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 BAATQ14032 418 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 ARHGEF16Q5VV41 709 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 FKBP1CQ5VVH2 108 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 RNF207Q6ZRF8 634 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 SLFN11Q7Z7L1 901 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 PPM1KQ8N3J5 372 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 PBKQ96KB5 322 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 MTFR1LQ9H019 292 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 AMFRQ9UKV5 643 aa17.82■□□□□ 0.44
CCDC88B-210ENST00000494566 UBE4BO95155 1302 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 TNFRSF8P28908 595 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 POTEAQ6S8J7 498 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 CCDC121Q6ZUS5 278 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 TAX1BP1Q86VP1 789 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 RPUSD2Q8IZ73 545 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 ACTRT1Q8TDG2 376 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 RFFLQ8WZ73 363 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 PDCD2LQ9BRP1 358 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 DOCK5Q9H7D0 1870 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 DNM1LO00429 736 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 PEX10O60683 326 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 BCRP11274 1271 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 FNTAP49354 379 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 KCTD17Q8N5Z5 321 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 XXYLT1Q8NBI6 393 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 AGPAT1Q99943 283 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 TMEM117Q9H0C3 514 aa17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-210ENST00000494566 MUTP22033 750 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 ADSSP30520 456 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 HSPA9P38646 679 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 MCF2L2Q86YR7 1114 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 BSNDQ8WZ55 320 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 SEMA4DQ92854 862 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 HES6Q96HZ4 224 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 PXMP2Q9NR77 195 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 FTLP02792 175 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 FGFR4P22455 802 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 KCNJ1P48048 391 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 LRRC14Q15048 493 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 INTS8Q75QN2 995 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 ANO5Q75V66 913 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 MTMR14Q8NCE2 650 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 JDP2Q8WYK2 163 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 ALG3Q92685 438 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 C18orf8Q96DM3 657 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 TBC1D31Q96DN5 1066 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 OSBPL7Q9BZF2 842 aa17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 SUCLA2Q9P2R7 463 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-210ENST00000494566 GMNCA6NCL1 334 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 HMGB1P1B2RPK0 211 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms