RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 PDCP20941 246 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 SLC11A1P49279 550 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 DUSP6Q16828 381 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 TMEM132AQ24JP5 1023 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 ARL6IP4Q66PJ3 421 aaKnown RBP36.7■■■■□ 3.47
CBX4-203ENST00000494546 IGSF21Q96ID5 467 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 GAD1Q99259 594 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 CDCA3Q99618 268 aaPredicted RBP36.7■■■■□ 3.47
CBX4-203ENST00000494546 KIFC3Q9BVG8 833 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 CD207Q9UJ71 328 aa36.7■■■■□ 3.47
CBX4-203ENST00000494546 GLP2RO95838 553 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 CA8P35219 290 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 MLH1P40692 756 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 MAPK6Q16659 721 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 FAM187BQ17R55 369 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 KCNK18Q7Z418 384 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 FAM178BQ8IXR5 827 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 CLEC1BQ9P126 229 aa36.69■■■■□ 3.46
CBX4-203ENST00000494546 BARX2Q9UMQ3 279 aaPredicted RBP36.69■■■■□ 3.46
CBX4-203ENST00000494546 ARL5CA6NH57 179 aa36.68■■■■□ 3.46
CBX4-203ENST00000494546 PRKCBP05771 671 aa36.68■■■■□ 3.46
CBX4-203ENST00000494546 RBM10P98175 930 aaKnown RBP36.68■■■■□ 3.46
CBX4-203ENST00000494546 PRPF4BQ13523 1007 aaKnown RBP36.68■■■■□ 3.46
CBX4-203ENST00000494546 SMC1AQ14683 1233 aaKnown RBP36.68■■■■□ 3.46
CBX4-203ENST00000494546 VPS52Q8N1B4 723 aa36.68■■■■□ 3.46
CBX4-203ENST00000494546 BCL7CQ8WUZ0 217 aaPredicted RBP36.68■■■■□ 3.46
CBX4-203ENST00000494546 PLIN2Q99541 437 aa36.68■■■■□ 3.46
CBX4-203ENST00000494546 GTF3C3Q9Y5Q9 886 aa36.68■■■■□ 3.46
CBX4-203ENST00000494546 CDK5RAP3Q96JB5 506 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 MSLNLQ96KJ4 702 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 ZFP42Q96MM3 310 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 RUSC1Q9BVN2 902 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 CCDC113Q9H0I3 377 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 FOXD4L1Q9NU39 408 aa36.67■■■■□ 3.46
CBX4-203ENST00000494546 TTLL13PA6NNM8 815 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 MBTPS2O43462 519 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 AKAP5P24588 427 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 SMAD4Q13485 552 aaKnown RBP36.66■■■■□ 3.46
CBX4-203ENST00000494546 BMS1Q14692 1282 aaKnown RBP36.66■■■■□ 3.46
CBX4-203ENST00000494546 VN1R2Q8NFZ6 395 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 PNMA5Q96PV4 448 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 USP20Q9Y2K6 914 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 GIT1Q9Y2X7 761 aa36.66■■■■□ 3.46
CBX4-203ENST00000494546 FSD2A1L4K1 749 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 N4BP3O15049 544 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 HIP1RO75146 1068 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 ALDH2P05091 517 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 SSBP05455 408 aaKnown RBP eCLIP36.65■■■■□ 3.46
CBX4-203ENST00000494546 SCNN1GP51170 649 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 HYIQ5T013 277 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 RINT1Q6NUQ1 792 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 DDX53Q86TM3 631 aaKnown RBP36.65■■■■□ 3.46
CBX4-203ENST00000494546 MRPL43Q8N983 215 aaKnown RBP36.65■■■■□ 3.46
CBX4-203ENST00000494546 TMEM175Q9BSA9 504 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 NT5C3AQ9H0P0 336 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 PDZD7Q9H5P4 517 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 CD320Q9NPF0 282 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 PARP2Q9UGN5 583 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 FAN1Q9Y2M0 1017 aa36.65■■■■□ 3.46
CBX4-203ENST00000494546 K7ELQ4 463 aaPredicted RBP36.64■■■■□ 3.46
CBX4-203ENST00000494546 ACKR2O00590 384 aa36.64■■■■□ 3.46
CBX4-203ENST00000494546 BMP15O95972 392 aa36.64■■■■□ 3.46
CBX4-203ENST00000494546 SSTR3P32745 418 aaPredicted RBP36.64■■■■□ 3.46
CBX4-203ENST00000494546 EFNA5P52803 228 aa36.64■■■■□ 3.46
CBX4-203ENST00000494546 INTS4Q96HW7 963 aaKnown RBP36.64■■■■□ 3.46
CBX4-203ENST00000494546 ZBP1Q9H171 429 aa36.64■■■■□ 3.46
CBX4-203ENST00000494546 MIOSQ9NXC5 875 aa36.64■■■■□ 3.46
CBX4-203ENST00000494546 CCDC169A6NNP5 214 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 INPPL1O15357 1258 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 CXCL14O95715 111 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 PEX3P56589 373 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 SF3A1Q15459 793 aaKnown RBP36.63■■■■□ 3.45
CBX4-203ENST00000494546 LLGL2Q6P1M3 1020 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 C1orf186Q6ZWK4 172 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 CABP7Q86V35 215 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 KLK14Q9P0G3 267 aa36.63■■■■□ 3.45
CBX4-203ENST00000494546 MUC3AQ02505 3323 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 C2orf71A6NGG8 1288 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 NRP1O14786 923 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 EDN1P05305 212 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 SYT1P21579 422 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 SMAD2Q15796 467 aaKnown RBP36.62■■■■□ 3.45
CBX4-203ENST00000494546 DAW1Q8N136 415 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 GJD3Q8N144 294 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 AUTS2Q8WXX7 1259 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 AK8Q96MA6 479 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 DRC1Q96MC2 740 aa36.62■■■■□ 3.45
CBX4-203ENST00000494546 PRG3Q9Y2Y8 225 aaPredicted RBP36.62■■■■□ 3.45
CBX4-203ENST00000494546 SRGAP2BP0DMP2 458 aa36.61■■■■□ 3.45
CBX4-203ENST00000494546 NPTX2P47972 431 aa36.61■■■■□ 3.45
CBX4-203ENST00000494546 COASYQ13057 564 aa36.61■■■■□ 3.45
CBX4-203ENST00000494546 DMP1Q13316 513 aaPredicted RBP36.61■■■■□ 3.45
CBX4-203ENST00000494546 COLGALT2Q8IYK4 626 aa36.61■■■■□ 3.45
CBX4-203ENST00000494546 ADPGKQ9BRR6 497 aa36.61■■■■□ 3.45
CBX4-203ENST00000494546 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP36.6■■■■□ 3.45
CBX4-203ENST00000494546 OR1G1P47890 313 aa36.6■■■■□ 3.45
CBX4-203ENST00000494546 RAD51AP2Q09MP3 1159 aa36.6■■■■□ 3.45
CBX4-203ENST00000494546 KCTD17Q8N5Z5 321 aa36.6■■■■□ 3.45
CBX4-203ENST00000494546 SMRP1Q8NCR6 262 aa36.6■■■■□ 3.45
CBX4-203ENST00000494546 VN1R3Q9BXE9 311 aa36.6■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms