RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SLC9A1P19634 815 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 PAX7P23759 505 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 RPA1P27694 616 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 SCTRP47872 440 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 TAF12Q16514 161 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 SLITRK6Q9H5Y7 841 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 ACAD9Q9H845 621 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 KCNQ5Q9NR82 932 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 A0A087X0B3 334 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 TCP11X1B4DZS4 312 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 YWHABP31946 246 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 SFNP31947 248 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 LMBRD2Q68DH5 695 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 FAM49AQ9H0Q0 323 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 STOML1Q9UBI4 398 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 DLG5Q8TDM6 1919 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 POLRMTO00411 1230 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 PSMD6Q15008 389 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 DNAJC24Q6P3W2 148 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 TUFT1Q9NNX1 390 aa17.41■□□□□ 0.38
CCDC88B-209ENST00000494080 TBX3O15119 743 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 HSD17B3P37058 310 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 RANBP1P43487 201 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 FRMD5Q7Z6J6 570 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 TRIM51Q9BSJ1 452 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 GOLPH3Q9H4A6 298 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 CNOT8Q9UFF9 292 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 EXOC1LA0A1B0GW35 172 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 FAM149B1Q96BN6 582 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 LRRC37BQ96QE4 947 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 DNAJC7Q99615 494 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 KBTBD4Q9NVX7 518 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 ANAPC7Q9UJX3 599 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 PODXLO00592 558 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 IFRD2Q12894 506 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 SLC30A10Q6XR72 485 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 RHOT2Q8IXI1 618 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 CASKIN2Q8WXE0 1202 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 TGS1Q96RS0 853 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 LBHD1Q9BQE6 289 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 SPC25Q9HBM1 224 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 CAPN9O14815 690 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 SLURP2P0DP57 97 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 ANGEL2Q5VTE6 544 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 MED10Q9BTT4 135 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 KIF9Q9HAQ2 790 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 RNF181Q9P0P0 153 aa17.4■□□□□ 0.38
CCDC88B-209ENST00000494080 WDR46O15213 610 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 FTLP02792 175 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 TMEM270Q6UE05 265 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 ABTB1Q969K4 478 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 ZBTB10Q96DT7 871 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 TRIM11Q96F44 468 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 CYTH2Q99418 400 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 FBXO40Q9UH90 709 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 ZSCAN5CA6NGD5 496 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 KLRC1P26715 233 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 COG2Q14746 738 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 R3HDM1Q15032 1099 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 SLFN12LQ6IEE8 588 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 APOBEC3FQ8IUX4 373 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 RAPGEF5Q92565 580 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 DEFB129Q9H1M3 183 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 MRPL47Q9HD33 250 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 ZNF302Q9NR11 478 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 MSH4O15457 936 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 UCHL3P15374 230 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 SERPINB6P35237 376 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 PSMC4P43686 418 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 RNASELQ05823 741 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 CCDC14Q49A88 953 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 PLA2G4FQ68DD2 849 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 BBOF1Q8ND07 529 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 GSDMBQ8TAX9 411 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 RIOX1Q9H6W3 641 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 MYOZ2Q9NPC6 264 aa17.39■□□□□ 0.37
CCDC88B-209ENST00000494080 SSU72P8A0A1W2PR75 194 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 STK10O94804 968 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ANP32DO95626 131 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ESRRAP11474 423 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 BMP6P22004 513 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 SHMT1P34896 483 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 MAPK6Q16659 721 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 SWT1Q5T5J6 900 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 AGBL2Q5U5Z8 902 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 POLR3FQ9H1D9 316 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 RASA4BC9J798 803 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 H7C0C1 242 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 SGK1O00141 431 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 RASA4O43374 803 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 MED24O75448 989 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 GLI1P08151 1106 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 NR3C2P08235 984 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ATP5OP48047 213 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 PDE1CQ14123 709 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 SLC18A3Q16572 532 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 LPAR1Q92633 364 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 CALN1Q9BXU9 219 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 EDEM3Q9BZQ6 932 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms