RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SAFBQ15424 915 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL6A3-213ENST00000493475 PTPN14Q15678 1187 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 CALCRLQ16602 461 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 FERMT3Q86UX7 667 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 ATOH1Q92858 354 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-213ENST00000493475 ASIC4Q96FT7 647 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 LARP6Q9BRS8 491 aaKnown RBP12.88□□□□□ -0.35
COL6A3-213ENST00000493475 COLEC11Q9BWP8 271 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 TECTAO75443 2155 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 POMCP01189 267 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 SOD2P04179 222 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 SSBP05455 408 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL6A3-213ENST00000493475 EPCAMP16422 314 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 OR1G1P47890 313 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 GLUD2P49448 558 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 AK2P54819 239 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 CYP4A11Q02928 519 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 TMEM132AQ24JP5 1023 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 TMC5Q6UXY8 1006 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 PRSS33Q8NF86 280 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 AUTS2Q8WXX7 1259 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 DYDC2Q96IM9 177 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 AIFM3Q96NN9 605 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 RPS6KC1Q96S38 1066 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL6A3-213ENST00000493475 ANKEF1Q9NU02 776 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 DNAJB4Q9UDY4 337 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 ZDBF2Q9HCK1 2354 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 ZNF318Q5VUA4 2279 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 TRIOO75962 3097 aa12.87□□□□□ -0.35
COL6A3-213ENST00000493475 NRP1O14786 923 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 NEMFO60524 1076 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 LYPLA2O95372 231 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 GLUD1P00367 558 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 C1RP00736 705 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 CLCN4P51793 760 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 PTENP60484 403 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 CTTNQ14247 550 aaKnown RBP12.86□□□□□ -0.35
COL6A3-213ENST00000493475 NPY5RQ15761 445 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 AGMOQ6ZNB7 445 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 APBB1IPQ7Z5R6 666 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-213ENST00000493475 GPR149Q86SP6 731 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 ZBTB8OSQ8IWT0 167 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 ERMNQ8TAM6 284 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 SLC22A17Q8WUG5 538 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 KLHL5Q96PQ7 755 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 EIF2AK1Q9BQI3 630 aaKnown RBP12.86□□□□□ -0.35
COL6A3-213ENST00000493475 HERC2P3Q9BVR0 1158 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 NFKBIZQ9BYH8 718 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 CSRNP2Q9H175 543 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 OCEL1Q9H607 264 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 RGL1Q9NZL6 768 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 IGSF9Q9P2J2 1179 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 FBXL21Q9UKT6 434 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 GIT1Q9Y2X7 761 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 PRG3Q9Y2Y8 225 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-213ENST00000493475 IPPQ9Y573 584 aa12.86□□□□□ -0.35
COL6A3-213ENST00000493475 ZMYM2Q9UBW7 1377 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 ARL5CA6NH57 179 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 C2CD2LO14523 706 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 CNPP09543 421 aaKnown RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 XRCC6P12956 609 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 HOXA11P31270 313 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 CLCN5P51795 746 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 TDGQ13569 410 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 SLC27A1Q6PCB7 646 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 TMEM173Q86WV6 379 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 ZNF280BQ86YH2 543 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 GPR65Q8IYL9 337 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 C12orf76Q8N812 135 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 MCPH1Q8NEM0 835 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 CMASQ8NFW8 434 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 HDAC7Q8WUI4 952 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 HAS1Q92839 578 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 PRIMPOLQ96LW4 560 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 C2orf40Q9H1Z8 148 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 PLEKHA4Q9H4M7 779 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 TTC12Q9H892 705 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-213ENST00000493475 PIDD1Q9HB75 910 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 LIMD1Q9UGP4 676 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 TPCN1Q9ULQ1 816 aa12.85□□□□□ -0.35
COL6A3-213ENST00000493475 TSPAN1O60635 241 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 DDHD2O94830 711 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 BRD1O95696 1058 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 WEE2P0C1S8 567 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 MLH1P40692 756 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 TXKP42681 527 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 MMRN1Q13201 1228 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 GNL2Q13823 731 aaKnown RBP12.84□□□□□ -0.35
COL6A3-213ENST00000493475 USP41Q3LFD5 358 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 PDXDC1Q6P996 788 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 IFNLR1Q8IU57 520 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-213ENST00000493475 SPNS2Q8IVW8 549 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 NXPE3Q969Y0 559 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 GAD1Q99259 594 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 ADPGKQ9BRR6 497 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 RHOBTB2Q9BYZ6 727 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 MAN1C1Q9NR34 630 aa12.84□□□□□ -0.35
COL6A3-213ENST00000493475 PRMT7Q9NVM4 692 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-213ENST00000493475 WDFY4Q6ZS81 3184 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms