RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 RBM43Q6ZSC3 357 aaKnown RBP17.26■□□□□ 0.35
HPS4-216ENST00000493455 OTOP2Q7RTS6 562 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 RNF169Q8NCN4 708 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 APBB2Q92870 758 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ACO2Q99798 780 aaKnown RBP17.26■□□□□ 0.35
HPS4-216ENST00000493455 ADPGKQ9BRR6 497 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 APOL6Q9BWW8 343 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 TRIM6Q9C030 488 aaPredicted RBP17.26■□□□□ 0.35
HPS4-216ENST00000493455 PDZD7Q9H5P4 517 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ZMYM2Q9UBW7 1377 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ACTN1P12814 892 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 SCP2P22307 547 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 AXLP30530 894 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 HOXA11P31270 313 aaPredicted RBP17.25■□□□□ 0.35
HPS4-216ENST00000493455 HOXD13P35453 343 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 EPHB4P54760 987 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 STX17P56962 302 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 MLLT1Q03111 559 aaPredicted RBP17.25■□□□□ 0.35
HPS4-216ENST00000493455 IKBKEQ14164 716 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 PCBP1Q15365 356 aaKnown RBP eCLIP17.25■□□□□ 0.35
HPS4-216ENST00000493455 STX1AQ16623 288 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 KNOP1Q1ED39 458 aaKnown RBP17.25■□□□□ 0.35
HPS4-216ENST00000493455 ZNF365Q70YC5 407 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 GUF1Q8N442 669 aaKnown RBP17.25■□□□□ 0.35
HPS4-216ENST00000493455 EIF2AQ9BY44 585 aaKnown RBP17.25■□□□□ 0.35
HPS4-216ENST00000493455 GBP3Q9H0R5 595 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 PCIF1Q9H4Z3 704 aa17.25■□□□□ 0.35
HPS4-216ENST00000493455 TRIM49BA6NDI0 452 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 PSMA7O14818 248 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 LETM1O95202 739 aaPredicted RBP17.24■□□□□ 0.35
HPS4-216ENST00000493455 FGBP02675 491 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 PFKMP08237 780 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 RGS19P49795 217 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 CYP2J2P51589 502 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 OSTNP61366 133 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 TYRO3Q06418 890 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 BMT2Q1RMZ1 405 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 SEZ6Q53EL9 994 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 ARMCX5Q6P1M9 558 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 SLC39A4Q6P5W5 647 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 SLC27A1Q6PCB7 646 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 MPZL3Q6UWV2 235 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 HS2ST1Q7LGA3 356 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 THNSL1Q8IYQ7 743 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 ADSSL1Q8N142 457 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 NELFBQ8WX92 580 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 LINC01599Q8WXQ3 324 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 POMGNT1Q8WZA1 660 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 VWCEQ96DN2 955 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.24■□□□□ 0.35
HPS4-216ENST00000493455 MSTO1Q9BUK6 570 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 FTHL17Q9BXU8 183 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 GTPBP4Q9BZE4 634 aaKnown RBP17.24■□□□□ 0.35
HPS4-216ENST00000493455 TNFSF13BQ9Y275 285 aa17.24■□□□□ 0.35
HPS4-216ENST00000493455 A0A1B0GUA9 196 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 PPP1R3GB7ZBB8 358 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 CLDN3O15551 220 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 CALUO43852 315 aaPredicted RBP17.23■□□□□ 0.35
HPS4-216ENST00000493455 TOM1L1O75674 476 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 DSC3Q14574 896 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 NOLC1Q14978 699 aaKnown RBP eCLIP17.23■□□□□ 0.35
HPS4-216ENST00000493455 PSRC1Q6PGN9 363 aaPredicted RBP17.23■□□□□ 0.35
HPS4-216ENST00000493455 ZPBP2Q6X784 338 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 C16orf59Q7L2K0 433 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 SAAL1Q96ER3 474 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 TSG101Q99816 390 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 CBWD1Q9BRT8 395 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 CDT1Q9H211 546 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 CHST12Q9NRB3 414 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 TYW1Q9NV66 732 aaKnown RBP17.23■□□□□ 0.35
HPS4-216ENST00000493455 DACH1Q9UI36 760 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 HES2Q9Y543 173 aa17.23■□□□□ 0.35
HPS4-216ENST00000493455 GOLGA8IPA6NC78 632 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 GOLGA8JA6NMD2 632 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 TGFB1I1O43294 461 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 UPP2O95045 317 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 PIGRP01833 764 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 CCDC192P0DO97 292 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 KCNJ6P48051 423 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 PAK1Q13153 545 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 UBXN11Q5T124 520 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 FAM117BQ6P1L5 589 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.22■□□□□ 0.354e-8■□□□□ 10.8
HPS4-216ENST00000493455 C11orf57Q6ZUT1 292 aaPredicted RBP17.22■□□□□ 0.35
HPS4-216ENST00000493455 APBB1IPQ7Z5R6 666 aaPredicted RBP17.22■□□□□ 0.35
HPS4-216ENST00000493455 RTN4RL1Q86UN2 441 aaPredicted RBP17.22■□□□□ 0.35
HPS4-216ENST00000493455 CEP120Q8N960 986 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 MLKLQ8NB16 471 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 LPPQ93052 612 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 P2RX5Q93086 422 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 UBE2OQ9C0C9 1292 aaKnown RBP17.22■□□□□ 0.35
HPS4-216ENST00000493455 HAPLN2Q9GZV7 340 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 DNAJC25Q9H1X3 360 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 KCTD10Q9H3F6 313 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 SEMA6BQ9H3T3 888 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 AGPAT3Q9NRZ7 376 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 RGS18Q9NS28 235 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 FAM105AQ9NUU6 356 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 ANO10Q9NW15 660 aa17.22■□□□□ 0.35
HPS4-216ENST00000493455 LRFN2Q9ULH4 789 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms