RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 MRPL4Q9BYD3 311 aaKnown RBP18.86■□□□□ 0.61
LIME1-208ENST00000493265 IFIH1Q9BYX4 1025 aaKnown RBP18.86■□□□□ 0.61
LIME1-208ENST00000493265 ERVK-5Q9HDB9 667 aa18.86■□□□□ 0.61
LIME1-208ENST00000493265 PIN4Q9Y237 131 aaKnown RBP18.86■□□□□ 0.61
LIME1-208ENST00000493265 SCN5AQ14524 2016 aa18.86■□□□□ 0.61
LIME1-208ENST00000493265 ACKR2O00590 384 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 HNRNPDLO14979 420 aaKnown RBP18.85■□□□□ 0.61
LIME1-208ENST00000493265 CD44P16070 742 aaKnown RBP18.85■□□□□ 0.61
LIME1-208ENST00000493265 HOXD13P35453 343 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 LIG4P49917 911 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 STIM1Q13586 685 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 AMHR2Q16671 573 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 DPCR1Q3MIW9 517 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 MAP4K3Q8IVH8 894 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 USP38Q8NB14 1042 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 ZNF507Q8TCN5 953 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 HVCN1Q96D96 273 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 EXOC7Q9UPT5 735 aa18.85■□□□□ 0.61
LIME1-208ENST00000493265 TISP43B9A030 160 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 KIF20AO95235 890 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 ACRP10323 421 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 HARSP12081 509 aaKnown RBP18.84■□□□□ 0.61
LIME1-208ENST00000493265 ARF4P18085 180 aaPredicted RBP18.84■□□□□ 0.61
LIME1-208ENST00000493265 ABCD1P33897 745 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 TYRO3Q06418 890 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 FAM187BQ17R55 369 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 ATF7IP2Q5U623 682 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 PPP4R3CPQ6ZMV5 832 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 ZBTB33Q86T24 672 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 DBF4BQ8NFT6 615 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 SEPT8Q92599 483 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 TIFAQ96CG3 184 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 TCHPQ9BT92 498 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 GTPBP4Q9BZE4 634 aaKnown RBP18.84■□□□□ 0.61
LIME1-208ENST00000493265 ANKFY1Q9P2R3 1169 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 CTNND2Q9UQB3 1225 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 SQORQ9Y6N5 450 aa18.84■□□□□ 0.61
LIME1-208ENST00000493265 UBE4BO95155 1302 aa18.83■□□□□ 0.61
LIME1-208ENST00000493265 CNTNAP2Q9UHC6 1331 aa18.83■□□□□ 0.61
LIME1-208ENST00000493265 PPP1R3GB7ZBB8 358 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 ANKRD63C9JTQ0 380 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 PARNO95453 639 aaKnown RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 SCP2P22307 547 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 RFC2P35250 354 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 PPIGQ13427 754 aaKnown RBP eCLIP18.83■□□□□ 0.66e-9■■■■□ 19.6
LIME1-208ENST00000493265 STX1AQ16623 288 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 KNOP1Q1ED39 458 aaKnown RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 ADSSL1Q8N142 457 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 GUF1Q8N442 669 aaKnown RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 NOC3LQ8WTT2 800 aaKnown RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 ZBTB45Q96K62 511 aaPredicted RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 PRIMPOLQ96LW4 560 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 ACO2Q99798 780 aaKnown RBP18.83■□□□□ 0.6
LIME1-208ENST00000493265 TMX1Q9H3N1 280 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 ZNF576Q9H609 170 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 TMEM206Q9H813 350 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 AGPAT5Q9NUQ2 364 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 GBF1Q92538 1859 aa18.83■□□□□ 0.6
LIME1-208ENST00000493265 ZMYM2Q9UBW7 1377 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 GRXCR1A8MXD5 290 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 TULP1O00294 542 aaPredicted RBP18.82■□□□□ 0.6
LIME1-208ENST00000493265 ZSCAN20P17040 1043 aaPredicted RBP18.82■□□□□ 0.6
LIME1-208ENST00000493265 HOXA11P31270 313 aaPredicted RBP18.82■□□□□ 0.6
LIME1-208ENST00000493265 PBX2P40425 430 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 STX17P56962 302 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 BMT2Q1RMZ1 405 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 TCTN1Q2MV58 587 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 PLEKHG4Q58EX7 1191 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 TMEM240Q5SV17 173 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 EEF1DP3Q658K8 133 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 TWF2Q6IBS0 349 aaKnown RBP18.82■□□□□ 0.6
LIME1-208ENST00000493265 SLC39A4Q6P5W5 647 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 NOTUMQ6P988 496 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 C16orf59Q7L2K0 433 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 MLKLQ8NB16 471 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 NELFBQ8WX92 580 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 GBP3Q9H0R5 595 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 PDZD7Q9H5P4 517 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 ANO10Q9NW15 660 aa18.82■□□□□ 0.6
LIME1-208ENST00000493265 PSMA7O14818 248 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 N4BP3O15049 544 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 CLIC2O15247 247 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 MGEA5O60502 916 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 NPTXRO95502 500 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 CXCL10P02778 98 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 CCDC192P0DO97 292 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 PCBP1Q15365 356 aaKnown RBP eCLIP18.81■□□□□ 0.6
LIME1-208ENST00000493265 ZNF568Q3ZCX4 644 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 HS2ST1Q7LGA3 356 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 ADAM2Q99965 735 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 DNAJC25Q9H1X3 360 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 PCIF1Q9H4Z3 704 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 IL23AQ9NPF7 189 aa18.81■□□□□ 0.6
LIME1-208ENST00000493265 TRIM49BA6NDI0 452 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 TGFB1I1O43294 461 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 AXLP30530 894 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 ANO6Q4KMQ2 910 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 MPZL3Q6UWV2 235 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 ZPBP2Q6X784 338 aa18.8■□□□□ 0.6
LIME1-208ENST00000493265 C11orf57Q6ZUT1 292 aaPredicted RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms