RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 CPB2Q96IY4 423 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 CDK5RAP3Q96JB5 506 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 RIPOR3Q96MK2 946 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 NECTIN4Q96NY8 510 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 MRPL17Q9NRX2 175 aaKnown RBP18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 PARP2Q9UGN5 583 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 KIAA1024Q9UPX6 916 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 USP15Q9Y4E8 981 aaPredicted RBP18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 IPPQ9Y573 584 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 PCDHGC5Q9Y5F6 944 aa18.32■□□□□ 0.52
PDLIM2-217ENST00000491330 LOXHD1Q8IVV2 1947 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 C2orf71A6NGG8 1288 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 HIDE1A8MVS5 230 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 POMCP01189 267 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 CTSAP10619 480 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 NAMPTP43490 491 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 PRPF4BQ13523 1007 aaKnown RBP18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 POTEGQ6S5H5 508 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 APOL6Q9BWW8 343 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 NR2E1Q9Y466 385 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 IRAK3Q9Y616 596 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 TCF20Q9UGU0 1960 aaKnown RBP18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 TRANK1O15050 2925 aa18.31■□□□□ 0.52
PDLIM2-217ENST00000491330 A0A1B0GUA9 196 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 C19orf67A6NJJ6 358 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 WNT7AO00755 349 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 URODP06132 367 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 ARF4P18085 180 aaPredicted RBP18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 KLRC2P26717 231 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 SLC11A1P49279 550 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 CBX2Q14781 532 aaPredicted RBP18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 UBXN11Q5T124 520 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 PPP4R3CPQ6ZMV5 832 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 ZBTB33Q86T24 672 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 NT5C3AQ9H0P0 336 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 BHMT2Q9H2M3 363 aa18.3■□□□□ 0.52
PDLIM2-217ENST00000491330 A0A087WWV3 80 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 ARL5CA6NH57 179 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 PRR33A8MZF0 331 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 NRP1O14786 923 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 NPTXRO95502 500 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 BMP15O95972 392 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 LIG1P18858 919 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 PDCP20941 246 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 GJB2P29033 226 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 MLH1P40692 756 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 MTHFRP42898 656 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 FAM187BQ17R55 369 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 ATAT1Q5SQI0 421 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 LARP1BQ659C4 914 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 CABP7Q86V35 215 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 RPGRIP1Q96KN7 1286 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 DRC1Q96MC2 740 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 GAD1Q99259 594 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 LRFN3Q9BTN0 628 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 TIPINQ9BVW5 301 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 EIF2AQ9BY44 585 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 ZBP1Q9H171 429 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 CD320Q9NPF0 282 aa18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 DDX19AQ9NUU7 478 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-217ENST00000491330 K7ERI5 159 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 GLP2RO95838 553 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 PRKCBP05771 671 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 CREMQ03060 361 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 ZNF280BQ86YH2 543 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 IGSF22Q8N9C0 903 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 SMG8Q8ND04 991 aaKnown RBP18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 GPRC5CQ9NQ84 441 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 DNAJB4Q9UDY4 337 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 RBM19Q9Y4C8 960 aaKnown RBP18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 PCDHB6Q9Y5E3 794 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 HCFC2Q9Y5Z7 792 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 ZMYM2Q9UBW7 1377 aa18.28■□□□□ 0.52
PDLIM2-217ENST00000491330 PRUNE2Q8WUY3 3088 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 CCDC169A6NNP5 214 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 MEIS3P2A8K0S8 358 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 ACKR2O00590 384 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 CLASP2O75122 1294 aaKnown RBP18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 TADA2AO75478 443 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 SOD2P04179 222 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 ADH1AP07327 375 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 SMTNP53814 917 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 GRIK3Q13003 919 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 DMP1Q13316 513 aaPredicted RBP18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 ZRSR1Q15695 479 aaKnown RBP18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 DCAF4L1Q3SXM0 396 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 CDCA2Q69YH5 1023 aaPredicted RBP18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 RNF135Q8IUD6 432 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 ADAM7Q9H2U9 754 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 FZD8Q9H461 694 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 C17orf75Q9HAS0 396 aa18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 PRG3Q9Y2Y8 225 aaPredicted RBP18.27■□□□□ 0.52
PDLIM2-217ENST00000491330 NCOR1O75376 2440 aa18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 INPPL1O15357 1258 aa18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 DDHD2O94830 711 aa18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 SSBP05455 408 aaKnown RBP eCLIP18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 SCNN1GP51170 649 aa18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 YARSP54577 528 aaKnown RBP18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 AMHR2Q16671 573 aa18.26■□□□□ 0.51
PDLIM2-217ENST00000491330 HERC4Q5GLZ8 1057 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms