RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 POP1Q99575 1024 aaKnown RBP19.35■□□□□ 0.69
VIM-206ENST00000487938 ZNF341Q9BYN7 854 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 MEFVO15553 781 aaPredicted RBP19.35■□□□□ 0.69
VIM-206ENST00000487938 RTN2O75298 545 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 SHBGP04278 402 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 MXI1P50539 228 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 CBWD2Q8IUF1 395 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 SEMA4DQ92854 862 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 SAAL1Q96ER3 474 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 KREMEN1Q96MU8 473 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 TXLNGYQ9BZA5 131 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 RAVER2Q9HCJ3 691 aaKnown RBP19.35■□□□□ 0.69
VIM-206ENST00000487938 DBR1Q9UK59 544 aaKnown RBP19.35■□□□□ 0.69
VIM-206ENST00000487938 GMNCA6NCL1 334 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 ANKRD63C9JTQ0 380 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 KIAA0391O15091 583 aaKnown RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 MMEP08473 750 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 MYCLP12524 364 aaPredicted RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 EIF2AK2P19525 551 aaKnown RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 GTF2BQ00403 316 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 MTMR1Q13613 665 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 FAM102BQ5T8I3 360 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 RNF187Q5TA31 235 aaPredicted RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 PLA2G4FQ68DD2 849 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 PRELID2Q8N945 189 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 FBXO25Q8TCJ0 367 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 TAAR1Q96RJ0 339 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 RPTORQ8N122 1335 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 CAND2O75155 1236 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 MAPTP10636 758 aaKnown RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 PYGMP11217 842 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 PTGIRP43119 386 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 HADHBP55084 474 aaKnown RBP19.34■□□□□ 0.69
VIM-206ENST00000487938 IFT88Q13099 833 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 LLGL1Q15334 1064 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 FBXW10Q5XX13 1052 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 C11orf63Q6NUN7 778 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 ZDHHC24Q6UX98 284 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 EPS8L1Q8TE68 723 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 GMLQ99445 158 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 ZSWIM1Q9BR11 485 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 KIFC3Q9BVG8 833 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 UBIAD1Q9Y5Z9 338 aa19.34■□□□□ 0.69
VIM-206ENST00000487938 TCRBV7S2A1N4TA0A589 114 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 FAM187AA6NFU0 413 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 CCDC169A6NNP5 214 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 P4HA2O15460 535 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 ATP9AO75110 1047 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 PHF2O75151 1096 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 ALCAMQ13740 583 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 DHX34Q14147 1143 aaKnown RBP19.33■□□□□ 0.68
VIM-206ENST00000487938 PPP2R5EQ16537 467 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 TTC27Q6P3X3 843 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 AEBP2Q6ZN18 517 aaPredicted RBP19.33■□□□□ 0.68
VIM-206ENST00000487938 C12orf56Q8IXR9 622 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 MDM1Q8TC05 714 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 CYFIP2Q96F07 1278 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 EPB41L4BQ9H329 900 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 ZNF277Q9NRM2 450 aaPredicted RBP19.33■□□□□ 0.68
VIM-206ENST00000487938 STK32BQ9NY57 414 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 NOCTQ9UK39 431 aaKnown RBP19.33■□□□□ 0.68
VIM-206ENST00000487938 CAPN7Q9Y6W3 813 aa19.33■□□□□ 0.68
VIM-206ENST00000487938 MIF4GDA9UHW6 222 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 PEX5P50542 639 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 PMS2P54278 862 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 RASA3Q14644 834 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 QPCTQ16769 361 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 XKR9Q5GH70 373 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 FAM71AQ8IYT1 594 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 LARGE2Q8N3Y3 721 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 RAPGEF5Q92565 580 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 DEFB129Q9H1M3 183 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 TRPC6Q9Y210 931 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 SYNGAP1Q96PV0 1343 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 TLDC2A0PJX2 215 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 ADSSP30520 456 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 RPL21P46778 160 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 UBAP2Q5T6F2 1119 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 NSMFQ6X4W1 530 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 MICALCLQ6ZW33 695 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 SPATS2Q86XZ4 545 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 PRPF38AQ8NAV1 312 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 SYTL5Q8TDW5 730 aaPredicted RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 RNF25Q96BH1 459 aaPredicted RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 PSMD1Q99460 953 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 PFASO15067 1338 aa19.32■□□□□ 0.68
VIM-206ENST00000487938 ASTN2O75129 1339 aaPredicted RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 TNS1Q9HBL0 1735 aaKnown RBP19.32■□□□□ 0.68
VIM-206ENST00000487938 SMIM23A6NLE4 172 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 TRAPPC3O43617 180 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 TBC1D12O60347 775 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 CALCAP01258 141 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 SNRNP35Q16560 246 aaKnown RBP19.31■□□□□ 0.68
VIM-206ENST00000487938 PCNX4Q63HM2 1172 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 CCDC137Q6PK04 289 aaKnown RBP19.31■□□□□ 0.68
VIM-206ENST00000487938 UHMK1Q8TAS1 419 aaKnown RBP19.31■□□□□ 0.68
VIM-206ENST00000487938 NUP85Q9BW27 656 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 TOPORSQ9NS56 1045 aaPredicted RBP19.31■□□□□ 0.68
VIM-206ENST00000487938 GRHL1Q9NZI5 618 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 RASAL2Q9UJF2 1139 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms