RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PSMD14O00487 310 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 FDPSP14324 419 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 BYSLQ13895 437 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 RTKN2Q8IZC4 609 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 TDRD3Q9H7E2 651 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 CHD1O14646 1710 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 COPS2P61201 443 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 PSMC5P62195 406 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 NOP14P78316 857 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 CIAPIN1Q6FI81 312 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 RNF217Q8TC41 542 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 NSUN4Q96CB9 384 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 ZNF512BQ96KM6 892 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 SMYD3Q9H7B4 428 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 EIF3HO15372 352 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 AGTP01019 485 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 PMLP29590 882 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 ZNF568Q3ZCX4 644 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 GPD1LQ8N335 351 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 SPDYE1Q8NFV5 336 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 NRBF2Q96F24 287 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 NBPF3Q9H094 633 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM10Q9UDY6 481 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 E9PCH4 1651 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 KIAA1755Q5JYT7 1200 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 VPS11Q9H270 941 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 TUFT1Q9NNX1 390 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 IQSEC2Q5JU85 1478 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 NPHP3-ACAD11A0A0J9YXS1 232 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 PODNQ7Z5L7 613 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 FBXL13Q8NEE6 735 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 ZNF473Q8WTR7 871 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 ABTB1Q969K4 478 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 PCSK1NQ9UHG2 260 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 CCDC195A0A1B0GUA6 201 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 CTDNEP1O95476 244 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 PSMC1P62191 440 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 STAT4Q14765 748 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 NYAP1Q6ZVC0 841 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 CDC26Q8NHZ8 85 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 NSUN6Q8TEA1 469 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 CCDC124Q96CT7 223 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 GCOM2Q9BZD3 368 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 KRT82Q9NSB4 513 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 AKR1B1P15121 316 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 KIF19Q2TAC6 998 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 IL25Q9H293 177 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM33Q9UPN9 1127 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 EPHA7Q15375 998 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 LRRC23Q53EV4 343 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 RWDD4Q6NW29 188 aaKnown RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 ELOA2Q8IYF1 753 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-210ENST00000487017 ZNF302Q9NR11 478 aa17.47■□□□□ 0.39
COL7A1-210ENST00000487017 M0QYV0 167 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 GYPCP04921 128 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SDC4P31431 198 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 ROR1Q01973 937 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 DSTYKQ6XUX3 929 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 GABBR1Q9UBS5 961 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SLC9A2Q9UBY0 812 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 MYO3BQ8WXR4 1341 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 PI4K2BG5E9Z4 385 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SLC1A1P43005 524 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 AP2B1P63010 937 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 YWHAHQ04917 246 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SYDE1Q6ZW31 735 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SH2D3CQ8N5H7 860 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 POLR3FQ9H1D9 316 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 OLA1Q9NTK5 396 aaKnown RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 PARVAQ9NVD7 372 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 FOXP2O15409 715 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 PDHA1P08559 390 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 TRMT10CQ7L0Y3 403 aaKnown RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 PRMT1Q99873 361 aaKnown RBP17.46■□□□□ 0.39
COL7A1-210ENST00000487017 STK33Q9BYT3 514 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 A0A1W2PQJ5 194 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 RGS9BPQ6ZS82 235 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 CATSPER4Q7RTX7 472 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 HAUS6Q7Z4H7 955 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 SLC35G2Q8TBE7 412 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 EXT2Q93063 718 aa17.46■□□□□ 0.39
COL7A1-210ENST00000487017 NMT1P30419 496 aaKnown RBP17.46■□□□□ 0.38
COL7A1-210ENST00000487017 SPATA21Q7Z572 469 aa17.46■□□□□ 0.38
COL7A1-210ENST00000487017 GIPC2Q8TF65 315 aa17.46■□□□□ 0.38
COL7A1-210ENST00000487017 FAM161BQ96MY7 647 aa17.46■□□□□ 0.38
COL7A1-210ENST00000487017 INPP5FQ9Y2H2 1132 aa17.46■□□□□ 0.38
COL7A1-210ENST00000487017 NCOA3Q9Y6Q9 1424 aa17.46■□□□□ 0.38
COL7A1-210ENST00000487017 PHF2O75151 1096 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 PHKA2P46019 1235 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 PAPOLAP51003 745 aaKnown RBP17.45■□□□□ 0.38
COL7A1-210ENST00000487017 GPSM2P81274 684 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SWSAP1Q6NVH7 229 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 ENGASEQ8NFI3 743 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 ATL2Q8NHH9 583 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 ECE2O60344 883 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 PYGBP11216 843 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SMARCA1P28370 1054 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 TAP1Q03518 808 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms