RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 SERPINB2P05120 415 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 HOXA10P31260 410 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SIX1Q15475 284 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 ZNF568Q3ZCX4 644 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 CCDC38Q502W7 563 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SYDE2Q5VT97 1194 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 HHIPL2Q6UWX4 724 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SLC30A10Q6XR72 485 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 TRMT10CQ7L0Y3 403 aaKnown RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 TBC1D1Q86TI0 1168 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SLC13A5Q86YT5 568 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 RDH13Q8NBN7 331 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 TBC1D31Q96DN5 1066 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 CCDC113Q9H0I3 377 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 HOMER3Q9NSC5 361 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 MTUS1Q9ULD2 1270 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 AGAP1Q9UPQ3 857 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SIPA1L1O43166 1804 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 CHMP2AO43633 222 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 PSMD10O75832 226 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 CLTAP09496 248 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 RARAP10276 462 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 PPP2R5CQ13362 524 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 ODR4Q5SWX8 454 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 ARHGEF19Q8IW93 802 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 MIEF2Q96C03 454 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 WDR18Q9BV38 432 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 PTPN22Q9Y2R2 807 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 USP15Q9Y4E8 981 aaPredicted RBP13.12□□□□□ -0.31
COL3A1-206ENST00000487010 CEP83Q9Y592 693 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 MYH11P35749 1972 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 SPATA31A6Q5VVP1 1343 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 EMSYQ7Z589 1322 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 PIK3CDO00329 1044 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 UBOX5O94941 541 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 KCNJ1P48048 391 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 DLG4P78352 724 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 ICA1Q05084 483 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 IKQ13123 557 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 MYBPC2Q14324 1141 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 ZNF268Q14587 947 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 GALNTL6Q49A17 601 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 LRCH2Q5VUJ6 765 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 ZNF746Q6NUN9 644 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 PNMA8AQ86V59 439 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 SYCP3Q8IZU3 236 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 C12orf50Q8NA57 414 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 TEKT1Q969V4 418 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 GMCL1Q96IK5 515 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CRAMP1Q96RY5 1269 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 PCDHB18PQ96TA0 734 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 STRA6Q9BX79 667 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 EBF2Q9HAK2 575 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CHORDC1Q9UHD1 332 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 LRRC37AA6NMS7 1700 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 NQO1P15559 274 aaKnown RBP13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CHRNB2P17787 502 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 MUTP22033 750 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 NCALDP61601 193 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 LONRF1Q17RB8 773 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 ACCSLQ4AC99 568 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CCDC25Q86WR0 208 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 BANK1Q8NDB2 785 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 GMCL1P1Q8NEA9 526 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CCHCR1Q8TD31 782 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 DYDC1Q8WWB3 177 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 SLC5A5Q92911 643 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 SERPINB12Q96P63 405 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 NACC1Q96RE7 527 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 KCND2Q9NZV8 630 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 CD2APQ9Y5K6 639 aa13.11□□□□□ -0.31
COL3A1-206ENST00000487010 RBBP6Q7Z6E9 1792 aaKnown RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 TCP11X1B4DZS4 312 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 P4HA2O15460 535 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 SGPL1O95470 568 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 ECEL1O95672 775 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 NDUFB10O96000 172 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 GZMAP12544 262 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 SCP2P22307 547 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 PRELPP51888 382 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 CETN1Q12798 172 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 CALCOCO2Q13137 446 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 CRYMQ14894 314 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 LRRC14Q15048 493 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 EPC2Q52LR7 807 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 MIGA2Q7L4E1 593 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 SP8Q8IXZ3 490 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 ARHGEF2Q92974 986 aaKnown RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 STAMBPL1Q96FJ0 436 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 DDX23Q9BUQ8 820 aaKnown RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 CDC42EP4Q9H3Q1 356 aaKnown RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 LRRC19Q9H756 370 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 ECT2Q9H8V3 914 aa13.1□□□□□ -0.31
COL3A1-206ENST00000487010 WRAP73Q9P2S5 460 aaPredicted RBP13.1□□□□□ -0.31
COL3A1-206ENST00000487010 TMEM120BA0PK00 339 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 DDTLA6NHG4 134 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 ATMINO43313 823 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 SPOPO43791 374 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 SUN1O94901 812 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms