RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 HES2Q9Y543 173 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 IPPQ9Y573 584 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 A0A1B0GUA9 196 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 N4BP3O15049 544 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 CSPG5O95196 566 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 ITGA4P13612 1032 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 SMTNP53814 917 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 GIT2Q14161 759 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 PTPROQ16827 1216 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 TPRNQ4KMQ1 711 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 GLB1LQ6UWU2 654 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 DYMQ7RTS9 669 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 MYCT1Q8N699 235 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 SMG8Q8ND04 991 aaKnown RBP16.25■□□□□ 0.19
USP4-212ENST00000486549 LEO1Q8WVC0 666 aaPredicted RBP16.25■□□□□ 0.19
USP4-212ENST00000486549 DHX58Q96C10 678 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 ASB2Q96Q27 587 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 NXF3Q9H4D5 531 aaKnown RBP16.25■□□□□ 0.19
USP4-212ENST00000486549 PDZD7Q9H5P4 517 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 RSAD1Q9HA92 442 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 LARSQ9P2J5 1176 aaKnown RBP16.25■□□□□ 0.19
USP4-212ENST00000486549 ARHGAP28Q9P2N2 729 aa16.25■□□□□ 0.19
USP4-212ENST00000486549 PRRC2BQ5JSZ5 2229 aaKnown RBP16.25■□□□□ 0.19
USP4-212ENST00000486549 ANP32AP39687 249 aaKnown RBP16.24■□□□□ 0.19
USP4-212ENST00000486549 NUCB2P80303 420 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 NT5DC1Q5TFE4 455 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 EEF1DP3Q658K8 133 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 AGMOQ6ZNB7 445 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 LRRC55Q6ZSA7 311 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 TAS1R3Q7RTX0 852 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 MRPL10Q7Z7H8 261 aaKnown RBP16.24■□□□□ 0.19
USP4-212ENST00000486549 CNNM3Q8NE01 707 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 SPIRE2Q8WWL2 714 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 ADPGKQ9BRR6 497 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 C11orf84Q9BUA3 381 aaPredicted RBP16.24■□□□□ 0.19
USP4-212ENST00000486549 MRPL9Q9BYD2 267 aaKnown RBP16.24■□□□□ 0.19
USP4-212ENST00000486549 RNF39Q9H2S5 420 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 CWH43Q9H720 699 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 PARVGQ9HBI0 331 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 FAM13BQ9NYF5 915 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 RBM19Q9Y4C8 960 aaKnown RBP16.24■□□□□ 0.19
USP4-212ENST00000486549 EYSQ5T1H1 3165 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 PLXNA4Q9HCM2 1894 aa16.24■□□□□ 0.19
USP4-212ENST00000486549 MYMKA6NI61 221 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 H3BNC9 293 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 K7ENM7 598 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 OFD1O75665 1012 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 RB1P06400 928 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 PBX3P40426 434 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 STRN3Q13033 797 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 NOMO2Q5JPE7 1267 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 ATF7IP2Q5U623 682 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 RESP18Q5W5W9 173 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 HACE1Q8IYU2 909 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 COLGALT1Q8NBJ5 622 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 TMEM161BQ8NDZ6 487 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 URGCPQ8TCY9 931 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 DDX12PQ92771 950 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 STAMQ92783 540 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 MRPL4Q9BYD3 311 aaKnown RBP16.23■□□□□ 0.19
USP4-212ENST00000486549 GBP3Q9H0R5 595 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 TMEM134Q9H6X4 195 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 ALG13Q9NP73 1137 aaKnown RBP16.23■□□□□ 0.19
USP4-212ENST00000486549 AAASQ9NRG9 546 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 PARP2Q9UGN5 583 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 KCNG1Q9UIX4 513 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 PCDHB12Q9Y5F1 795 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 TDRD15B5MCY1 1934 aaKnown RBP16.23■□□□□ 0.19
USP4-212ENST00000486549 ATG2AQ2TAZ0 1938 aa16.23■□□□□ 0.19
USP4-212ENST00000486549 C5orf67F2Z3F1 127 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 POLR2DO15514 142 aaKnown RBP16.22■□□□□ 0.19
USP4-212ENST00000486549 POMCP01189 267 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 MAPTP10636 758 aaKnown RBP16.22■□□□□ 0.19
USP4-212ENST00000486549 LAG3P18627 525 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 AKAP5P24588 427 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 MLH1P40692 756 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 ZNF131P52739 623 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 NCKAP1LP55160 1127 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 RNASELQ05823 741 aaKnown RBP16.22■□□□□ 0.19
USP4-212ENST00000486549 E2F4Q16254 413 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 FAM178BQ8IXR5 827 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 THNSL1Q8IYQ7 743 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 KLHL23Q8NBE8 558 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 HLA-CQ95604 372 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 TARS2Q9BW92 718 aaKnown RBP16.22■□□□□ 0.19
USP4-212ENST00000486549 PLVAPQ9BX97 442 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 SCAND2PQ9GZW5 306 aaPredicted RBP16.22■□□□□ 0.19
USP4-212ENST00000486549 GDPD2Q9HCC8 539 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 TBC1D13Q9NVG8 400 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 PRUNE2Q8WUY3 3088 aa16.22■□□□□ 0.19
USP4-212ENST00000486549 H0YCG3 227 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 GRM6O15303 877 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 TRAK2O60296 914 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 ZC3H11AO75152 810 aaKnown RBP eCLIP16.21■□□□□ 0.19
USP4-212ENST00000486549 ITGB1P05556 798 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 HARSP12081 509 aaKnown RBP16.21■□□□□ 0.19
USP4-212ENST00000486549 IDEP14735 1019 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 AFF1P51825 1210 aaKnown RBP16.21■□□□□ 0.19
USP4-212ENST00000486549 DCAF4L1Q3SXM0 396 aa16.21■□□□□ 0.19
USP4-212ENST00000486549 ZNF568Q3ZCX4 644 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms