RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 WFS1O76024 890 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 TTLL1O95922 423 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 LDHBP07195 334 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 RBM26Q5T8P6 1007 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 APBB1IPQ7Z5R6 666 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 SLC20A1Q8WUM9 679 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 ZSWIM1Q9BR11 485 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 ADAM33Q9BZ11 813 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 ANKIB1Q9P2G1 1089 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 A0A1B0GVG6 124 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 GSTTP1A0A1W2PQM5 241 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 TAC1P20366 129 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 STRN3Q13033 797 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 MRRFQ96E11 262 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 MAGEB18Q96M61 343 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 METTL5Q9NRN9 209 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 CHKBQ9Y259 395 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 PCDHA3Q9Y5H8 950 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 COL4A1P02462 1669 aa20.12■□□□□ 0.81
CCDC88B-207ENST00000479965 ESYT2A0FGR8 921 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 RTN3O95197 1032 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 SLC16A2P36021 539 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 SKIV2L2P42285 1042 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 KRT17Q04695 432 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 GIT2Q14161 759 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 TMED2Q15363 201 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 PRUNE1Q86TP1 453 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 FAM186BQ8IYM0 893 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 AGGF1Q8N302 714 aaeCLIP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 STK33Q9BYT3 514 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 ADAMTSL3P82987 1691 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 TOM1O60784 492 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 CAMTA2O94983 1202 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 SP100P23497 879 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 CRKLP46109 303 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 POLGP54098 1239 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 LAMB3Q13751 1172 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 EPM2AIP1Q7L775 607 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 RASA4BC9J798 803 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 RASA4O43374 803 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 HSPA6P17066 643 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 CTNNA2P26232 953 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 SLC12A3P55017 1021 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 IL9RQ01113 521 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 RCN2Q14257 317 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 CLUL1Q15846 466 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 RNF207Q6ZRF8 634 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 MIGA2Q7L4E1 593 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 ZC3H3Q8IXZ2 948 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 LRMDAQ9H2I8 198 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 VCXQ9H320 206 aa20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 DENND2DQ9H6A0 471 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-207ENST00000479965 PAPPAQ13219 1627 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L15C9J2P7 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L13C9JLJ4 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L11C9JVI0 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L18D6R9N7 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L22D6RA61 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L17D6RBQ6 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L19D6RCP7 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L20D6RJB6 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 PDXKO00764 312 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 BAG3O95817 575 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 CETPP11597 493 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ALDH3A1P30838 453 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 CYP2J2P51589 502 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L24Q0WX57 530 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 MKRN3Q13064 507 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 USP17L6PQ6QN14 398 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ZNF287Q9HBT7 754 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 AAASQ9NRG9 546 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 CCDC87Q9NVE4 849 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 NAALADL1Q9UQQ1 740 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 MIF4GDA9UHW6 222 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 GRIK5Q16478 980 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 GALNT15Q8N3T1 639 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ASAP3Q8TDY4 903 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ATG4AQ8WYN0 398 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 C9orf72Q96LT7 481 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ANKRD27Q96NW4 1050 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 TYW1Q9NV66 732 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 PHTF1Q9UMS5 762 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ASTN1O14525 1302 aa20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 ZNF142P52746 1687 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-207ENST00000479965 MAPK13O15264 365 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CLDN3O15551 220 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 TBCAO75347 108 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CBWD6Q4V339 395 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CBWD3Q5JTY5 395 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CBWD5Q5RIA9 395 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CYP4F22Q6NT55 531 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 ZC3H18Q86VM9 953 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 SLC13A5Q86YT5 568 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 RHOT2Q8IXI1 618 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 OLIG1Q8TAK6 271 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 LRRC8CQ8TDW0 803 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 DNM3Q9UQ16 869 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 FOXN3O00409 490 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 NVLO15381 856 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 TTC4O95801 387 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms