RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 SH3BGRP55822 239 aaPredicted RBP22.7■■□□□ 1.22
SDF4-206ENST00000478938 IL9RQ01113 521 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 AMPD3Q01432 767 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 MTDHQ86UE4 582 aaKnown RBP22.7■■□□□ 1.22
SDF4-206ENST00000478938 CCDC125Q86Z20 511 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 MAP7D3Q8IWC1 876 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 SCUBE1Q8IWY4 988 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 NME8Q8N427 588 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 TSG101Q99816 390 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 CORO1BQ9BR76 489 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 ADARP55265 1226 aaKnown RBP22.7■■□□□ 1.22
SDF4-206ENST00000478938 PPP2R5EQ16537 467 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 PFKFB3Q16875 520 aaPredicted RBP22.7■■□□□ 1.22
SDF4-206ENST00000478938 ALG3Q92685 438 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 OXCT2Q9BYC2 517 aaPredicted RBP22.7■■□□□ 1.22
SDF4-206ENST00000478938 SPATA7Q9P0W8 599 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 PARP2Q9UGN5 583 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 PHF2O75151 1096 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 POTEJP0CG39 1038 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 THOC5Q13769 683 aaKnown RBP22.69■■□□□ 1.22
SDF4-206ENST00000478938 TTC5Q8N0Z6 440 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 U2AF1L4Q8WU68 220 aaKnown RBP22.69■■□□□ 1.22
SDF4-206ENST00000478938 IL1RAPL1Q9NZN1 696 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 BOLA2-SMG1P6H3BVE0 249 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 GSC2O15499 205 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 EPS15P42566 896 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 DSG1Q02413 1049 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 PRELID2Q8N945 189 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 ART4Q93070 314 aa22.69■■□□□ 1.22
SDF4-206ENST00000478938 E2F6O75461 281 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 AMPD1P23109 780 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 CTC1Q2NKJ3 1217 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 SH3D19Q5HYK7 790 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 PTF1AQ7RTS3 328 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 SCYL3Q8IZE3 742 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 MKL1Q969V6 931 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 ECSITQ9BQ95 431 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 NLRP2Q9NX02 1062 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 ZNF568Q3ZCX4 644 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 KLC3Q6P597 504 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 PPP1R21Q6ZMI0 780 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 UNC13DQ70J99 1090 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 NLRP9Q7RTR0 991 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 CLNKQ7Z7G1 428 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 ZDHHC14Q8IZN3 488 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 RBM46Q8TBY0 533 aaKnown RBP22.68■■□□□ 1.22
SDF4-206ENST00000478938 CDK5RAP3Q96JB5 506 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 BTBD10Q9BSF8 475 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 UBN1Q9NPG3 1134 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 AAASQ9NRG9 546 aa22.68■■□□□ 1.22
SDF4-206ENST00000478938 IGSF9BQ9UPX0 1349 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 SPAG7O75391 227 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 ALOX15P16050 662 aaPredicted RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 GALCP54803 685 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 PHEXP78562 749 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 RBM26Q5T8P6 1007 aaKnown RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 TBC1D9BQ66K14 1250 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 TRMT10CQ7L0Y3 403 aaKnown RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 TTLL11Q8NHH1 800 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 C17orf50Q8WW18 174 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 MCUR1Q96AQ8 359 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 ARL8BQ9NVJ2 186 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 DDX18Q9NVP1 670 aaKnown RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 TTLL1O95922 423 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 PYGMP11217 842 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 HARSP12081 509 aaKnown RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 SLC9A1P19634 815 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 PAX3P23760 479 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 CTTNQ14247 550 aaKnown RBP22.67■■□□□ 1.22
SDF4-206ENST00000478938 SDR42E1Q8WUS8 393 aa22.67■■□□□ 1.22
SDF4-206ENST00000478938 A0A0A6YYK5 440 aaPredicted RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 VCAM1P19320 739 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 CHKAP35790 457 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 TECP42680 631 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 TMEM266Q2M3C6 531 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 KBTBD12Q3ZCT8 623 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 CCDC137Q6PK04 289 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 SV2BQ7L1I2 683 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 EPM2AIP1Q7L775 607 aaPredicted RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 PRUNE1Q86TP1 453 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 SLC35G2Q8TBE7 412 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 EBF3Q9H4W6 596 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 NENFQ9UMX5 172 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 PCDHA4Q9UN74 947 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 TDRKHQ9Y2W6 561 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 ZNF711Q9Y462 761 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 CYP2D7A0A087X1C5 515 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 GYG2O15488 501 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 MAFGO15525 162 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 CCDC22O60826 627 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 ASMTLO95671 621 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 FKBP3Q00688 224 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 SLC44A4Q53GD3 710 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 PHLDB3Q6NSJ2 640 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 PDCD7Q8N8D1 485 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 FNBP1Q96RU3 617 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 POP1Q99575 1024 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 SIKE1Q9BRV8 207 aa22.66■■□□□ 1.22
SDF4-206ENST00000478938 RANBP17Q9H2T7 1088 aaKnown RBP22.66■■□□□ 1.22
SDF4-206ENST00000478938 ADGRA3Q8IWK6 1321 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms