RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 HOXD13P35453 343 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 KCNA1Q09470 495 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 STIM1Q13586 685 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 CT47A1Q5JQC4 288 aaPredicted RBP16.65■□□□□ 0.26
NPHP4-205ENST00000466897 SLC27A1Q6PCB7 646 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 DEFB128Q7Z7B8 93 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 ADSSL1Q8N142 457 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 MLKLQ8NB16 471 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 GOLGA5Q8TBA6 731 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 TARS2Q9BW92 718 aaKnown RBP16.65■□□□□ 0.26
NPHP4-205ENST00000466897 GBP3Q9H0R5 595 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 KCTD10Q9H3F6 313 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 PDZD7Q9H5P4 517 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 RGS18Q9NS28 235 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 ANK1P16157 1881 aa16.65■□□□□ 0.26
NPHP4-205ENST00000466897 TTLL13PA6NNM8 815 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 BIN1O00499 593 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 ABLIM1O14639 778 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 SKIP12755 728 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 ZSCAN20P17040 1043 aaPredicted RBP16.64■□□□□ 0.25
NPHP4-205ENST00000466897 PRCPP42785 496 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 LIG4P49917 911 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 RAB27AP51159 221 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 NLRP12P59046 1061 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 IKBKEQ14164 716 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 NFIL3Q16649 462 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 DCAF4L1Q3SXM0 396 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 SLFN12LQ6IEE8 588 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 MPZL3Q6UWV2 235 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 C12orf56Q8IXR9 622 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 SYCP3Q8IZU3 236 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 BICD1Q96G01 975 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 DHTKD1Q96HY7 919 aaPredicted RBP16.64■□□□□ 0.25
NPHP4-205ENST00000466897 ADPGKQ9BRR6 497 aa16.64■□□□□ 0.25
NPHP4-205ENST00000466897 TYW1Q9NV66 732 aaKnown RBP16.64■□□□□ 0.25
NPHP4-205ENST00000466897 RNF216Q9NWF9 866 aaPredicted RBP16.64■□□□□ 0.25
NPHP4-205ENST00000466897 A0A0U1RQF3 1178 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 PDXKO00764 312 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 PSMA7O14818 248 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 KIAA0391O15091 583 aaKnown RBP16.63■□□□□ 0.25
NPHP4-205ENST00000466897 TGFB1I1O43294 461 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 MGEA5O60502 916 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 ZNF623O75123 536 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 GARTP22102 1010 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 MCL1Q07820 350 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 TWF2Q6IBS0 349 aaKnown RBP16.63■□□□□ 0.25
NPHP4-205ENST00000466897 CENPPQ6IPU0 288 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 SLC39A4Q6P5W5 647 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 SASS6Q6UVJ0 657 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 SLC24A5Q71RS6 500 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 C16orf59Q7L2K0 433 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 HS2ST1Q7LGA3 356 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 SMYD4Q8IYR2 804 aaPredicted RBP16.63■□□□□ 0.25
NPHP4-205ENST00000466897 LINC01599Q8WXQ3 324 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 CPB2Q96IY4 423 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 ADAM2Q99965 735 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 DACH1Q9UI36 760 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 TRAF3IP3Q9Y228 551 aa16.63■□□□□ 0.25
NPHP4-205ENST00000466897 TRIP11Q15643 1979 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 A0A0B4J269 797 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 PPP1R3GB7ZBB8 358 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 C9IYK1 514 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 CLDN3O15551 220 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 FGBP02675 491 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 MCF2P10911 925 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 MAGEA10P43363 369 aaPredicted RBP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 FAM189BP81408 668 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 MYBPC2Q14324 1141 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 HSP90AA2PQ14568 343 aaPredicted RBP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 NOLC1Q14978 699 aaKnown RBP eCLIP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 KYAT1Q16773 422 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 TMEM132AQ24JP5 1023 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 TCTN1Q2MV58 587 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 ZNF568Q3ZCX4 644 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 ZCWPW2Q504Y3 356 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 TMEM240Q5SV17 173 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 UBXN11Q5T124 520 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 RTN4RL1Q86UN2 441 aaPredicted RBP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 SLC9A9Q8IVB4 645 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 NELFCDQ8IXH7 590 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 HERVK_113Q902F9 699 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 GDF15Q99988 308 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 ELAC1Q9H777 363 aaKnown RBP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 AGPAT3Q9NRZ7 376 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 FAM105AQ9NUU6 356 aa16.62■□□□□ 0.25
NPHP4-205ENST00000466897 FNDC1Q4ZHG4 1894 aaPredicted RBP16.62■□□□□ 0.25
NPHP4-205ENST00000466897 TDRD15B5MCY1 1934 aaKnown RBP16.61■□□□□ 0.25
NPHP4-205ENST00000466897 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ANKRD63C9JTQ0 380 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 H0YGN5 161 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ENPP3O14638 875 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ACRP10323 421 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 CD44P16070 742 aaKnown RBP16.61■□□□□ 0.25
NPHP4-205ENST00000466897 ADSSP30520 456 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 EPHB4P54760 987 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 POU5F1Q01860 360 aaKnown RBP16.61■□□□□ 0.25
NPHP4-205ENST00000466897 LRRC63Q05C16 580 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 STX1AQ16623 288 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 EDRF1Q3B7T1 1238 aa16.61■□□□□ 0.25
NPHP4-205ENST00000466897 DPCR1Q3MIW9 517 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms