RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ATMINO43313 823 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 ZNF862O60290 1169 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 SORBS3O60504 671 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 PPFIA4O75335 1185 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 HSD17B3P37058 310 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 ATP1A2P50993 1020 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 GNGT1P63211 74 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 POU5F1Q01860 360 aaKnown RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 SP4Q02446 784 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 UAP1Q16222 522 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 MAATS1Q7Z4T9 603 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 NLRX1Q86UT6 975 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 SLC47A2Q86VL8 602 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 VSIG10LQ86VR7 867 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 MICALL2Q8IY33 904 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC26Q8TAB7 109 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 EPS8L1Q8TE68 723 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 BBXQ8WY36 941 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 IWS1Q96ST2 819 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TIPINQ9BVW5 301 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 DPH5Q9H2P9 285 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 SLITRK6Q9H5Y7 841 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 ERVK-5Q9HDB9 667 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 KMT5AQ9NQR1 393 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 GABBR1Q9UBS5 961 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TTC7AQ9ULT0 858 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 PCDHA10Q9Y5I2 948 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 COL11A1P12107 1806 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 PFASO15067 1338 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 GRIN2DO15399 1336 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 NFKBIEO00221 500 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 MAPK13O15264 365 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 SMTNP53814 917 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 BACE1P56817 501 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 DMP1Q13316 513 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 CEP85LQ5SZL2 805 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 SNRNP48Q6IEG0 339 aaKnown RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 SLC39A4Q6P5W5 647 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 SRLQ86TD4 932 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 MAP4K3Q8IVH8 894 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 CD302Q8IX05 232 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 RHOT2Q8IXI1 618 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 FAM71AQ8IYT1 594 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 SAMD3Q8N6K7 520 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 EIF1ADQ8N9N8 165 aaKnown RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 OR2W6PQ8NHA6 318 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 PARD3BQ8TEW8 1205 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.65□□□□□ -0.861e-6■■■■■ 56.2
SYNE1-217ENST00000466159 KRT35Q92764 455 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 FAM84AQ96KN4 292 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 CEP170P1Q96L14 293 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 TRIM51Q9BSJ1 452 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 TRIM31Q9BZY9 425 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 CARD9Q9H257 536 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 NOCTQ9UK39 431 aaKnown RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 RRP15Q9Y3B9 282 aaKnown RBP9.65□□□□□ -0.86
SYNE1-217ENST00000466159 PARP14Q460N5 1801 aa9.65□□□□□ -0.86
SYNE1-217ENST00000466159 ADGRA3Q8IWK6 1321 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 RTN2O75298 545 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 RGS20O76081 388 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 CLSTN1O94985 981 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 MMEP08473 750 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 CCND2P30279 289 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 MARCKSL1P49006 195 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 GMPSP49915 693 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-217ENST00000466159 SNRPFP62306 86 aaKnown RBP9.65□□□□□ -0.87
SYNE1-217ENST00000466159 GPC5P78333 572 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 DALRD3Q5D0E6 543 aaKnown RBP9.65□□□□□ -0.87
SYNE1-217ENST00000466159 TMEM51Q9NW97 253 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 EXOC7Q9UPT5 735 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 GJA3Q9Y6H8 435 aa9.65□□□□□ -0.87
SYNE1-217ENST00000466159 MYO1CO00159 1063 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 PMM2O15305 246 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 EIF3HO15372 352 aaKnown RBP eCLIP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 STBD1O95210 358 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 HMGCS2P54868 508 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 HADHBP55084 474 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SKOR1P84550 965 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 PDCLQ13371 301 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 MESDQ14696 234 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 KRT39Q6A163 491 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SWSAP1Q6NVH7 229 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 CPNE8Q86YQ8 564 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 HELQQ8TDG4 1101 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 TAS1R2Q8TE23 839 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 GLG1Q92896 1179 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 VTI1AQ96AJ9 217 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 BTBD6Q96KE9 485 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 GINM1Q9NU53 330 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 CNOT7Q9UIV1 285 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 DIS3Q9Y2L1 958 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 UTP11Q9Y3A2 253 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 ANKRD65E5RJM6 399 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 H0YGN5 161 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 TRIM66O15016 1216 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 CALCAP01258 141 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 DLATP10515 647 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 KCNA2P16389 499 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 COMTP21964 271 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 MFAP3P55082 362 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms