RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 LARSQ9P2J5 1176 aaKnown RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 TRPC6Q9Y210 931 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 MAFBQ9Y5Q3 323 aaPredicted RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 CDY2AQ9Y6F7 541 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 MYH11P35749 1972 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 A0A1W2PQC6 194 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 ARHGEF35A5YM69 484 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 TBCAO75347 108 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 SSBP05455 408 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP54-209ENST00000464635 TPM2P07951 284 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 YWHABP31946 246 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 PBX1P40424 430 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 SLC26A2P50443 739 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 KCNQ1P51787 676 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 MRPS5P82675 430 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 MRPS6P82932 125 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 TMEM62Q0P6H9 643 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 FBXO47Q5MNV8 452 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 ANKRD40Q6AI12 368 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 IRF2BP1Q8IU81 584 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 CCDC60Q8IWA6 550 aaPredicted RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 DRC7Q8IY82 874 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 CSGALNACT2Q8N6G5 542 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 CCDC150Q8NCX0 1101 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 GOLGA5Q8TBA6 731 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 ADAMTS19Q8TE59 1207 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 LINC01599Q8WXQ3 324 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 APBB2Q92870 758 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 TOP1MTQ969P6 601 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 NECAB3Q96P71 396 aaPredicted RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 DUSP9Q99956 384 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 NTPCRQ9BSD7 190 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 STRA6Q9BX79 667 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 AZI2Q9H6S1 392 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 AGO3Q9H9G7 860 aaKnown RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 SLC39A2Q9NP94 309 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 MAGEC2Q9UBF1 373 aaPredicted RBP12.94□□□□□ -0.34
USP54-209ENST00000464635 INSL6Q9Y581 213 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 PCDHB13Q9Y5F0 798 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 XIRP2A4UGR9 3374 aa12.94□□□□□ -0.34
USP54-209ENST00000464635 IGSF9BQ9UPX0 1349 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 KCNJ18B7U540 433 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 CHMP2AO43633 222 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 NRDCO43847 1150 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 ZNF500O60304 480 aaPredicted RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 FAM13AO94988 1023 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 DNM2P50570 870 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 STAT5BP51692 787 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 MCCD1P59942 119 aaPredicted RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 PPP2R3AQ06190 1150 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 TBX2Q13207 712 aaPredicted RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 TRIM14Q14142 442 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 KCNJ12Q14500 433 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 KNOP1Q1ED39 458 aaKnown RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 XKR3Q5GH77 459 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 SPECC1LQ69YQ0 1117 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 PADI6Q6TGC4 694 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 PLPPR4Q7Z2D5 763 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 FBXO22Q8NEZ5 403 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 SCFD1Q8WVM8 642 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 HVCN1Q96D96 273 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 DRC1Q96MC2 740 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 NAP1L5Q96NT1 182 aaPredicted RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 YME1L1Q96TA2 773 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 SRRTQ9BXP5 876 aaKnown RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 NIFKQ9BYG3 293 aaKnown RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 KCTD10Q9H3F6 313 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 KCND1Q9NSA2 647 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 WRAP73Q9P2S5 460 aaPredicted RBP12.93□□□□□ -0.34
USP54-209ENST00000464635 SAMM50Q9Y512 469 aa12.93□□□□□ -0.34
USP54-209ENST00000464635 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.93□□□□□ -0.34
USP54-209ENST00000464635 RRN3P2A6NIE6 340 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 H0YCG3 227 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 DGAT1O75907 488 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 STBD1O95210 358 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 MSNP26038 577 aaKnown RBP12.92□□□□□ -0.34
USP54-209ENST00000464635 RPL13P26373 211 aaKnown RBP12.92□□□□□ -0.34
USP54-209ENST00000464635 CD52P31358 61 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 COPB1P53618 953 aaKnown RBP12.92□□□□□ -0.34
USP54-209ENST00000464635 STX17P56962 302 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 KRT31Q15323 416 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 FNDC1Q4ZHG4 1894 aaPredicted RBP12.92□□□□□ -0.34
USP54-209ENST00000464635 TSHZ1Q6ZSZ6 1077 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 ZNF720Q7Z2F6 126 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 CCDC186Q7Z3E2 898 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 RSPH3Q86UC2 560 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 LRRC8AQ8IWT6 810 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 CCDC112Q8NEF3 446 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 MCPH1Q8NEM0 835 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 PIGOQ8TEQ8 1089 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 SPIRE2Q8WWL2 714 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 KIFAP3Q92845 792 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 FIZ1Q96SL8 496 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 RUSC1Q9BVN2 902 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 TSPYL2Q9H2G4 693 aaPredicted RBP12.92□□□□□ -0.34
USP54-209ENST00000464635 TRPV2Q9Y5S1 764 aa12.92□□□□□ -0.34
USP54-209ENST00000464635 ZBTB42B2RXF5 422 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 BACH1O14867 736 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 CALUO43852 315 aaPredicted RBP12.91□□□□□ -0.34
USP54-209ENST00000464635 GAS2O43903 313 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms