RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 Q7L0L9 218 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 DPP9Q86TI2 863 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 SPICE1Q8N0Z3 855 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 DEFB123Q8N688 67 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 NPLOC4Q8TAT6 608 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 APPBP2Q92624 585 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 TOX2Q96NM4 488 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 MKRN2Q9H000 416 aaKnown RBP8.64□□□□□ -1.03
USP54-208ENST00000461520 SLC6A17Q9H1V8 727 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 MROH8Q9H579 483 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 SLC5A4Q9NY91 659 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 FLRT1Q9NZU1 646 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 DDX20Q9UHI6 824 aaKnown RBP8.64□□□□□ -1.03
USP54-208ENST00000461520 PFASO15067 1338 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 GSG1L2A8MUP6 293 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ERC2O15083 957 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 RNF113AO15541 343 aaKnown RBP8.63□□□□□ -1.03
USP54-208ENST00000461520 SLC25A27O95847 323 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ACRP10323 421 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 GNAT2P19087 354 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ADORA2AP29274 412 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 BBS9Q3SYG4 887 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ZNF605Q86T29 641 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 C1QL4Q86Z23 238 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 LRRC56Q8IYG6 542 aaPredicted RBP8.63□□□□□ -1.03
USP54-208ENST00000461520 ABRAQ8N0Z2 381 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 OSBP2Q969R2 916 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 INTS4Q96HW7 963 aaKnown RBP8.63□□□□□ -1.03
USP54-208ENST00000461520 ZNF287Q9HBT7 754 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 CHST7Q9NS84 486 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 GFOD1Q9NXC2 390 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 FBXL21Q9UKT6 434 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ADAMTS5Q9UNA0 930 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 A0A0C4DFX4 3053 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 A0A0G2JMZ2 1700 aa8.63□□□□□ -1.03
USP54-208ENST00000461520 ROBO3Q96MS0 1386 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 ZNF236Q9UL36 1845 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 NPIPB6E9PJ23 425 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 GPAA1O43292 621 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 CYBAP13498 195 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 CNGA1P29973 690 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 CYP2C19P33261 490 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 COPB2P35606 906 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 MAGEA10P43363 369 aaPredicted RBP8.62□□□□□ -1.03
USP54-208ENST00000461520 RACK1P63244 317 aaKnown RBP8.62□□□□□ -1.03
USP54-208ENST00000461520 PLS1Q14651 629 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 TMEM132BQ14DG7 1078 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 SNX17Q15036 470 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 TDHQ8IZJ6 230 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 MAP6Q96JE9 813 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 NYAP2Q9P242 653 aa8.62□□□□□ -1.03
USP54-208ENST00000461520 FRMPD3Q5JV73 1810 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 MYH7P12883 1935 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 RLFQ13129 1914 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 BAZ2AQ9UIF9 1905 aaKnown RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 MYOCOSA0A1B0GUC4 107 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 DNM1LO00429 736 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 VWA5AO00534 786 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 SEPT4O43236 478 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 FCER1AP12319 257 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 STAT3P40763 770 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 TDO2P48775 406 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 AUHQ13825 339 aaKnown RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 SLC14A2Q15849 920 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 LRIT3Q3SXY7 679 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 TSHZ3Q63HK5 1081 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 CEP128Q6ZU80 1094 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 IRF2BP1Q8IU81 584 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 RIOX2Q8IUF8 465 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 TRPV1Q8NER1 839 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 RNF34Q969K3 372 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 MAML3Q96JK9 1138 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 SENP6Q9GZR1 1112 aaPredicted RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 EPB41L4AQ9HCS5 686 aaPredicted RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 METTL5Q9NRN9 209 aaKnown RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 FBXO28Q9NVF7 368 aa8.61□□□□□ -1.03
USP54-208ENST00000461520 DIS3Q9Y2L1 958 aaKnown RBP8.61□□□□□ -1.03
USP54-208ENST00000461520 MYH8P13535 1937 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 IGKV6D-41A0A0C4DH26 115 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 C9IYK1 514 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 F5H6K3 240 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 M0R2C6 588 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 APPP05067 770 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 RRP1P56182 461 aaKnown RBP8.6□□□□□ -1.03
USP54-208ENST00000461520 KLRC3Q07444 240 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 LRRC26Q2I0M4 334 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 FBLN7Q53RD9 439 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 FAM83BQ5T0W9 1011 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 FBXW10Q5XX13 1052 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 NLRX1Q86UT6 975 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 IFNL3Q8IZI9 196 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 ZNF444Q8N0Y2 327 aaPredicted RBP8.6□□□□□ -1.03
USP54-208ENST00000461520 ARRDC4Q8NCT1 418 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 REPS2Q8NFH8 660 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 FERD3LQ96RJ6 166 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 MMP19Q99542 508 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 NACAP1Q9BZK3 213 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 CD320Q9NPF0 282 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 MTMR10Q9NXD2 777 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 NRBP1Q9UHY1 535 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms